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Table 1 Transcriptome Datasets used in our study

From: Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias

ID Tissues/Stages Tissue classification # Total reads % contaminating adaptor sequences % bases >q20 Uniquely mapped reads in FGS gene space % reads in FGS gene space Reference
1 Trans SAM related - embryo 22994564 5.24 95.87 17664753 76.82 [63]
2 LM SAM related - LM 33567585 3.66 97.70 18748653 55.85 [63]
3 L1 SAM related - embryo 39027020 2.11 98.14 25877026 66.31 [63]
4 L14 SAM related - embryo 31676873 3.31 98.10 24636049 77.77 [63]
5 Col SAM related - embryo 41066790 2.95 98.05 27532949 67.04 [63]
6 V5_Shoot_tip SAM containing 37966015 5.49 96.71 31957110 84.17 [45]
7 V3_Stem and SAM SAM containing 75700900 7.24 90.86 58077428 76.72 [45]
8 V1_4D_PE_Stem_SAM SAM containing 68096357 5.66 95.80 58736028 86.25 [45]
9 V5_First_elonagetd_internode stem 50620425 5.42 96.78 42021210 83.01 [45]
10 V9_Fourth_elongated_internode stem 49883803 4.68 96.64 42811552 85.82 [45]
11 V1_4D_PE_Primary_root root 34338211 5.38 96.03 28431679 82.80 [45]
12 6DAS_GH_Primary Root root 75974682 7.89 94.81 58789326 77.38 [45]
13 tassel_stg1 tassel 41685877 1.38 99.38 37715842 90.48 [64]
14 tassel_stg3 tassel 44907570 1.60 99.08 39810029 88.65 [64]
15 tassel_stg2 tassel 33527176 1.28 98.97 29884294 89.13 [64]
16 R1_Anthers tassel 50390993 6.51 95.22 42255501 83.86 [45]
17 V13_Immature_tassel tassel 67777936 4.83 96.86 57328334 84.58 [45]
18 V18_Meiotic_tassel tassel 90322080 4.17 96.99 76409461 84.60 [45]
19 V18_Immature_cob ear 63065877 4.27 96.92 51946957 82.37 [45]
20 ear_tip ear 19469355 3.85 97.91 17259171 88.65 [64]
21 ear_mid ear 22832854 1.66 98.69 20181747 88.39 [64]
22 ear_base ear 22257472 2.06 99.34 19599692 88.06 [64]
23 R1_Pre-pollination_cob ear 78890387 3.61 97.56 65827854 83.44 [45]
24 R1_Silks ear 85297444 3.47 97.73 73722387 86.43 [45]
25 16DAP_Whole_seed seed 36090184 5.88 96.18 30262739 83.85 [45]
26 24H_Germinating Seed seed 67115301 9.53 93.24 50590975 75.38 [45]
27 14DAP_Whole_seed seed 57197138 8.00 94.15 49994899 87.41 [45]
28 10DAP_Whole_seed seed 59980127 6.77 95.05 51983114 86.67 [45]
29 12DAP_Whole_seed seed 55057984 7.51 94.26 47658798 86.56 [45]
30 18DAP_Pericarp seed 45315693 8.06 94.50 37642629 83.07 [45]
31 2DAP_Whole_seed seed 50626444 7.31 94.38 43151312 85.23 [45]
32 18DAP_Whole_Seed seed 54296830 9.77 92.49 47308022 87.13 [45]
33 6DAP_Whole_seed seed 53677071 10.33 92.65 45188276 84.19 [45]
34 8DAP_Whole_Seed seed 58148634 10.14 92.10 48258631 82.99 [45]
35 20DAP_Whole_Seed seed 76914729 7.66 94.53 60236045 78.32 [45]
36 22DAP_Whole_Seed seed 71960325 8.36 93.25 61230630 85.09 [45]
37 24DAP_Whole_Seed seed 92168996 7.53 94.03 80572513 87.42 [45]
38 4DAP_Whole_Seed seed 100145919 8.22 93.97 84635434 84.51 [45]
39 14DAP_Endosperm endosperm 47165528 5.74 95.93 41130552 87.20 [45]
40 16DAP_Endosperm endosperm 43133667 24.17 81.93 36465697 84.54 [45]
41 24DAP_Endosperm endosperm 44105309 6.98 95.06 39097597 88.65 [45]
42 22DAP_Endosperm endosperm 50805946 8.39 93.89 44051966 86.71 [45]
43 20DAP_Endosperm endosperm 73033574 8.58 93.76 56588796 77.48 [45]
44 18DAP_Endosperm endosperm 71722169 9.68 92.92 62724952 87.46 [45]
45 12DAP_Endosperm endosperm 105002559 3.78 97.71 90746296 86.42 [45]
46 Pro embryo 29413276 4.14 96.73 12517310 42.56 [63]
47 16DAP_Embryo embryo 42474548 25.27 81.01 35238795 82.96 [45]
48 20DAP_Embryo embryo 46773334 8.18 93.69 39847251 85.19 [45]
49 22DAP_Embryo embryo 54593430 8.38 94.22 46407023 85.00 [45]
50 18DAP_Embryo embryo 66441077 8.93 93.22 55947651 84.21 [45]
51 24DAP_Embryo embryo 69915678 7.27 94.61 59151359 84.60 [45]
52 VT_Thirteenth_Leaf leaf 37375422 14.22 88.85 28643636 76.64 [45]
53 V9_Eleventh_Leaf leaf 34439420 9.38 92.76 29562400 85.84 [45]
54 R2_Thirteenth_Leaf leaf 44695525 11.87 91.31 35886544 80.29 [45]
55 V9_Thirteenth_Leaf leaf 44205877 14.04 89.31 36100685 81.66 [45]
56 V9_Eighth_Leaf leaf 50771168 13.85 89.38 42468259 83.65 [45]
57 V9_Immature_Leaves leaf 43514876 25.26 81.13 35013880 80.46 [45]
58 V1_4D_PE_Pooled_Leaves leaf 52523629 8.80 93.61 44510623 84.74 [45]
59 V3_Topmost_leaf leaf 55571667 6.22 96.08 46448356 83.58 [45]
60 V7_Bottom_of_transition_leaf leaf 53754587 5.08 96.09 46018705 85.61 [45]
61 V5_Bottom_of_transition_leaf leaf 62309853 5.04 97.24 53863310 86.44 [45]
62 V5_Tip of stage-2 Leaf leaf 79560349 6.88 94.70 63185974 79.42 [45]
63 V7_Tip_of_transition_leaf leaf 84671628 5.19 95.87 71020587 83.88 [45]
64 6_DAS_GH_Coleoptile leaf 121128249 6.43 94.92 103474057 85.43 [45]