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Table 2 Putative PRV responsive unigenes

From: De novo assembly of Sockeye salmon kidney transcriptomes reveal a limited early response to piscine reovirus with or without infectious hematopoietic necrosis virus superinfection

  

edgeR

DESeq2

 

Analysis

Unigene ID

Log2FC

p value

Log2FC

p value

blastx annotation

Group 1 vs 2 (14d mock vs PRV)

 

c197414_g1

0.9

0.0234

0.9

0.0002

 

c196659_g6

1.3

0.0456

1.2

0.0041

 

c194077_g5

1.7

0.0456

1.5

0.0112

 

c202007_g10

1.7

0.0456

1.5

0.0128

 

c191412_g1

1.7

0.0456

1.7

0.0106

 

c164000_g2

2.1

0.0260

1.8

0.0061

 

c191921_g6

8.0

0.0300

2.0

0.0480

Laminin subunit beta-1

c189417_g6

2.4

0.0212

2.0

0.0106

 

c195179_g3

2.4

0.0006

2.1

0.0002

 

c192081_g1

2.4

0.0002

2.1

0.0001

Nebulin

c190995_g6

2.8

0.0429

2.1

0.0141

 

c163909_g1

2.6

0.0104

2.2

0.0047

 

c191538_g2

3.1

0.0104

2.3

0.0051

 

c181963_g1

3.4

0.0212

2.5

0.0051

 

c197496_g5

4.0

0.0000

3.2

0.0000

 

Group 3 vs 6 (21d mock vs PRV)

 

c162029_g1

3.0

0.0057

2.3

0.0030

Ependymin

c198536_g3

3.9

0.0024

2.9

0.0003

18 s rRNA

Group 5 vs 8 (21d IHNV+ vs PRV/IHNV+)

 

c193589_g1

−2.8

0.0238

−2.3

0.0041

Matrix metalloproteinase-19

c188458_g3

3.2

0.0238

2.5

0.0033

Histidine ammonia-lyase

  1. Head kidney unigenes identified by both edgeR and DESeq2 as being differentially expressed in response to PRV. For each unigene, the Log2 fold change and 0.05 FDR adjusted p-value are presented as calculated by either edgeR or DESeq2 software packages. Best UniProt annotation (blastx E value < 1e-5) is provided where available