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Table 2 Summary of RGA identification results for 50 sequenced plant genomes

From: RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants

  1. Note: Two modes for database selection were used: the ‘Quick’ mode (Pfam + Gene3D) and the ‘Deep’ mode (Pfam + Gene3D + SMART + Superfamily). Results were separated by a slash if differences existed between the two modes. Plants were sorted by taxonomic groups which are labelled on the left side of the table. A. coerulea: Aquilegia coerulea; A. halleri: Anemone halleri; A. lyrata: Arabidopsis lyrata; A. thaliana: Arabidopsis thaliana; A. trichopoda: Amborella trichopoda; B. distachyon: Brachypodium distachyon; B. rapa: Brassica rapa; B. stricta: Boechera stricta; C. clementina: Citrus clementina; C. grandiflora: Capsella grandiflora; C. papaya: Carica papaya; C. reinhardtii: Chlamydomonas reinhardtii; C. rubella: Capsella rubella; C. sativus: Cucumis sativus; C. sinensis: Citrus sinensis; C. subellipsoidea: Coccomyxa subellipsoidea; E. grandis: Eucalyptus grandis; E. salsugineum: Eutrema salsugineum; F. vesca: Fragaria vesca; G. max: Glycine max; G. raimondii: Gossypium raimondii; K. laxiflora: Kalanchoe laxiflora ; L. usitatissimum: Linum usitatissimum; M. acuminata: Musa acuminata; M. domestica: Malus domestica; M. esculenta: Manihot esculenta; M. guttatus: Mimulus guttatus; M. pusilla: Micromonas pusilla; M. truncatula: Medicago truncatula; O. lucimarinus: Ostreococcus lucimarinus; O. sativa: Oryza sativa; P. hallii: Panicum hallii; P. patens: Physcomitrella patens; P. persica: Prunus persica; P. trichocarpa: Populus trichocarpa; P. virgatum: Panicum virgatum; P. vulgaris: Phaseolus vulgaris; R. communis: Ricinus communis; S. bicolor: Sorghum bicolor; S. italica: Setaria italica; S. lycopersicum: Solanum lycopersicum; S. moellendorffii: Selaginella moellendorffii; S. polyrhiza: Spirodela polyrhiza; S. purpurea: Salix purpurea; S. tuberosum: Solanum tuberosum; T. cacao: Theobroma cacao; V. carteri: Volvox carteri; V. vinifera: Vitis vinifera; Z. mays: Zea mays