Table 1 Unique domains that were identified in 40 switchgrass NB or NB-LRR proteins
Category | Unique domain | Protein ID | E-value | Structure |
|---|---|---|---|---|
Protein modification | Glutaredoxin | Pavir.Bb01048.1.p | 9.80E-08 | NB-LRR-Glutaredoxin |
Thioredoxin | Pavir.Fa01782.1.p | 3.70E-22 | NB-LRR-Thioredoxin | |
Pavir.Hb00484.1.p | 8.50E-21 | NB-LRR-Thioredoxin | ||
Protein tyrosine kinase | Pavir.Ba02898.1.p | 1.50E-26 | NB-LRR-PK | |
Serine/threonine phosphatases, family 2C, catalytic domain | Pavir.J24356.1.p | 2.90E-14 | NB-LRR-PP2C | |
Serine/Threonine protein kinases, catalytic domain | Pavir.Aa03320.1.p | 2.30E-13 | PK-NB-LRR | |
Pavir.Bb00833.1.p | 3.20E-30 | PK-NB | ||
Pavir.Ha00561.1.p | 4.10E-26 | PK-NB-LRR | ||
Pavir.Ha00691.1.p | 2.10E-97 | NB-LRR-PK | ||
Pavir.Ha01101.1.p | 2.40E-23 | PK-NB-LRR | ||
Pavir.Ha01108.1.p | 1.70E-25 | PK-NB-LRR | ||
Pavir.Ha01246.1.p | 4.00E-21 | PK-NB-LRR | ||
Pavir.Hb00345.1.p | 7.80E-16 | PK-NB-LRR | ||
Pavir.Hb00951.1.p | 6.20E-28 | PK-NB | ||
Pavir.Hb01026.1.p | 3.10E-22 | PK-NB | ||
Pavir.Hb01049.1.p | 8.40E-13 | PK-NB | ||
Pavir.Hb01188.1.p | 1.40E-28 | PK-NB | ||
Pavir.J00375.1.p | 2.40E-25 | PK-NB-LRR | ||
Pavir.J01180.1.p | 4.60E-27 | PK-NB-LRR | ||
Pavir.J16540.1.p | 1.60E-23 | PK-NB-LRR | ||
Pavir.J23132.1.p | 7.30E-19 | PK-NB | ||
Pavir.J36755.1.p | 3.30E-12 | PK-NB | ||
Pavir.J37596.1.p | 1.30E-14 | PK-NB | ||
Pavir.J39176.1.p | 4.00E-14 | PK-NB | ||
DNA binding, transcription | B3 DNA binding domain | Pavir.Ba02315.1.p | 2.20E-10 | B3-NB-LRR |
B3 DNA binding domain | Pavir.J20878.1.p | 3.10E-07 | B3-NB-LRR-WRKY | |
WRKY DNA binding domain | 1.00E-14 | |||
BED zinc finger | Pavir.Fa02339.1.p | 5.40E-09 | ZF-NB-LRR | |
Pavir.Ga00028.1.p | 5.40E-09 | ZF-NB-LRR | ||
Pavir.Gb00931.1.p | 1.70E-08 | ZF-NB-LRR | ||
Pavir.J19380.1.p | 2.50E-12 | ZF-NB-LRR | ||
Pavir.J40131.1.p | 7.80E-08 | ZF-NB | ||
WRKY DNA-binding domain | Pavir.J33941.1.p | 1.80E-14 | NB-LRR-WRKY | |
protein trafficking and vesicle movement | MSP (Major sperm protein) domain | Pavir.Ib02384.1.p | 1.10E-09 | MSP-NB-LRR |
Pavir.Ib02433.1.p | 1.50E-08 | MSP-NB-LRR | ||
Pavir.J18369.1.p | 5.10E-13 | MSP-NB | ||
Protein-protein interaction | WD domain, G-beta repeat | Pavir.J03445.1.p | 5.00E-06 | NB-LRR-WD |
hAT family C-terminal dimerisation region | Pavir.Fb01504.1.p | 3.50E-08 | NB-LRR-hAT | |
Sugar binding | Jacalin-like lectin domain | Pavir.Hb01174.1.p | 5.60E-11 | NB-LRR-Jacalin |
Signal transduction | Calmodulin binding protein-like | Pavir.Hb00190.1.p | 5.10E-79 | NB-LRR-Calmodulin |
Transposon element | gag-polypeptide of LTR copia-type | Pavir.Aa01444.1.p | 8.90E-07 | NB-LRR-LTR |