Sample | Sequencing | Initial reads | Trimmed reads | Mapped reads | % Reads mapped |
---|---|---|---|---|---|
Alamo | 101Â bp-PE | 221,647,550 | 216,244,584 | 180,996,166 | 84.35 |
Dacotah | 101Â bp-PE | 125,257,298 | 121,958,884 | 99,283,683 | 82.03 |
Alamo- 1 | 50Â bp-PE | 56,036,894 | 54,211,026 | 52,494,171 | 96 |
Alamo- 2 | 50Â bp-PE | 45,931,626 | 44,044,084 | 42,657,586 | 96 |
Alamo- 3 | 50Â bp-PE | 58,312,466 | 55,472,698 | 53,590,453 | 96 |
Dacotah- 1 | 50Â bp-PE | 59,434,186 | 56,774,376 | 54,489,840 | 96 |
Dacotah- 2 | 50Â bp-PE | 48,408,374 | 46,266,102 | 44,525,787 | 96 |
Dacotah- 3 | 50Â bp-PE | 63,304,978 | 61,060,688 | 58,815,617 | 96 |