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Table 2 RNA-seq analysis of ‘Alamo’ and ‘Dacotah’ used for variant detection and gene expression analysis. One sample of ‘Alamo’ and one sample of ‘Dacotah’ were sequenced at a deep coverage (36X and 20X, respectively) and were used for variant detection. Three biological replicates of ‘Alamo’ and ‘Dacotah’ were used for gene expression analysis and were sequenced between 3.7X and 5.2X coverage

From: Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass

Sample

Sequencing

Initial reads

Trimmed reads

Mapped reads

% Reads mapped

Alamo

101 bp-PE

221,647,550

216,244,584

180,996,166

84.35

Dacotah

101 bp-PE

125,257,298

121,958,884

99,283,683

82.03

Alamo- 1

50 bp-PE

56,036,894

54,211,026

52,494,171

96

Alamo- 2

50 bp-PE

45,931,626

44,044,084

42,657,586

96

Alamo- 3

50 bp-PE

58,312,466

55,472,698

53,590,453

96

Dacotah- 1

50 bp-PE

59,434,186

56,774,376

54,489,840

96

Dacotah- 2

50 bp-PE

48,408,374

46,266,102

44,525,787

96

Dacotah- 3

50 bp-PE

63,304,978

61,060,688

58,815,617

96