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Table 3 Significant Differentially Expressed RGHs between ‘Alamo’ and ‘Dacotah’

From: Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass

Gene ID

Chromosome

Gene start location

Gene end location

Alamo RPKMameans

Dacotah RPKMameans

Fold changeb

FDR corrected p-value3

Pavir.Ha01577

Chr08a

45819137

45820543

0.074

11.565

54.837

6.03E-08

Pavir.Hb00191

Chr08b

3683280

3690800

22.965

4.363

−5.724

1.02E-07

Pavir.J41099

contig99714

31

3755

10.721

0.387

−23.222

6.52E-07

Pavir.Ha00254

Chr08a

5275668

5283177

8.387

0.088

−43.065

2.74E-06

Pavir.Ea02999

Chr05a

52240105

52245554

7.763

0.145

−31.66

9.51E-06

Pavir.J18698

contig20439

2509

7946

0.019

10.273

68.028

1.57E-05

Pavir.J36183

contig58243

960

5090

7.474

0.014

−57.923

1.77E-05

Pavir.Ha00258

Chr08a

5331659

5334691

12.753

0.617

−18.44

3.17E-05

Pavir.Ba03626

Chr02a

73291071

73293182

0.139

8.63

30.634

5.28E-05

Pavir.J38310

contig74920

865

4419

0.377

8.784

16.208

5.28E-05

Pavir.J13560

contig156657

131

2675

0.565

8.893

11.899

1.71E-04

Pavir.J35611

contig54273

2061

5449

0.195

5.96

17.525

4.86E-03

Pavir.J01215

contig01325

2932

5562

7.052

1.095

−6.492

5.22E-03

Pavir.J03054

contig03762

12948

18535

4.087

0.096

−20.509

7.55E-03

Pavir.Aa01110

Chr01a

14217597

14230708

3.764

0.03

−26.75

0.013

Pavir.Ha01146

Chr08a

31223571

31227884

0.703

5.777

6.478

0.019

Pavir.Cb00441

Chr03b

7318929

7322714

11.648

26.964

2.068

0.034

Pavir.Bb00035

Chr02b

557471

559270

0.054

3.333

18.041

0.041

Pavir.Ha00828

Chr08a

23240515

23246499

3.354

0.02

−25.367

0.041

Pavir.J29227

contig33532

301

4214

3.316

0.035

−22.844

0.041

Pavir.J02637

contig03134

4596

14505

4.903

0.772

−6.169

0.048

  1. a RPKM reads per kilobase per million of reads mapped
  2. bFold Change = expression level difference between the two samples when using ‘Dacotah’ as the reference sample
  3. 3FDR corrected p-value = p-value that the Fold Change is significant based on the corrected False Discovery Rate