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Table 1 Strains as well as origins, clinical symptoms and host species of the Leptotrichiaceae members used in this study

From: Phylogenetic and comparative genomics of the family Leptotrichiaceae and introduction of a novel fingerprinting MLVA for Streptobacillus moniliformis

Strain no.

Strain designation

Species

Year of isolation

Host

Clinic/sample

Country

Strain reference

Genome reference

Accession number

1

DSM 12112T (=ATCC 14647T)

Streptobacillus moniliformis

1925

Human

Rat bite fever

France

[4]

[16]

CP001779.1CP001780.1

2

CIP 55-48

Streptobacillus moniliformis

1947

Mouse

Lymph adenitis

UK

n. d. a.

this study

LWQV00000000

3

ATCC 27747

Streptobacillus moniliformis

1964

Turkey

Septic arthritis

USA

[51]

this study

LWQW00000000

4

NCTC 10773

Streptobacillus moniliformis

1971

Human

Blood culture

UK

n. d. a.

this study

LYRU00000000

5

NCTC 11194

Streptobacillus moniliformis

1977

Human

Rat bite fever

UK

n. d. a.

this study

LWQX00000000

6

IPDH 144/80

Streptobacillus moniliformis

1980

Turkey

Septic arthritis

Germany

n. d. a.

this study

LWQY00000000

7

CIP 81-99

Streptobacillus moniliformis

1981

Human

Blood culture (wild rat bite)

France

n. d. a.

this study

LWSZ00000000

8

AHL 370-4

Streptobacillus moniliformis

1982

Mouse

Ear infection

Australia

n. d. a.

this study

LWTA00000000

9

NCTC 11941

Streptobacillus moniliformis

1983

Human

Haverhill fever

UK

n. d. a.

this study

LXKD00000000

10

IPDH 109/83

Streptobacillus moniliformis

1983

Turkey

Septic arthritis

Germany

n. d. a.

this study

LWTB00000000

11

ATCC 49567

Streptobacillus moniliformis

1989

Mouse

Lymph adenitis

Germany

[52]

this study

LWTC00000000

12

Kun 3 (RIVM)

Streptobacillus moniliformis

1991

Rat

Healthy

The Netherlands

[53]

this study

LWTD00000000

13

ATCC 49940

Streptobacillus moniliformis

1992

Rat

Otitis media

Germany

[54]

this study

LWTE00000000

14

B10/15

Streptobacillus moniliformis

Unknown

Wild rat

Unknown

The Netherlands

n. d. a.

this study

LWTF00000000

15

A378/1

Streptobacillus moniliformis

1995

Wild rat

Vaginal swab

Germany

DKFZ strain collection

this study

LWTG00000000

16

VA11257/2007

Streptobacillus moniliformis

2007

Human (farmer)

Rat bite fever, endocarditis

Germany

[55]

this study

LWTI00000000

17

VK105/14

Streptobacillus moniliformis

2008

Domestic rat

Abscess

Germany

TiHo strain collection

this study

LWTJ00000000

18

B5/1

Streptobacillus moniliformis

2009

Laboratory mouse

After rat bite

Germany

DKFZ strain collection

this study

LXKJ00000000

19

Marseille

Streptobacillus moniliformis

2009

Rat

Rat bite fever

La Réunion

[56]

this study

LXKI00000000

20

IKC1

Streptobacillus moniliformis

n. d. a.

Rat

Oral swab

Japan

[39]

this study

LXKH00000000

21

IKC5

Streptobacillus moniliformis

n. d. a.

Rat

Oral swab

Japan

[39]

this study

LXKG00000000

22

IKB1

Streptobacillus moniliformis

n. d. a.

Rat

Oral swab

Japan

[39]

this study

LXKF00000000

23

TSD4

Streptobacillus moniliformis

n. d. a.

Rat

Oral swab

Japan

[39]

this study

LXKE00000000

24

131000547T (DSM 29248T)

Streptobacillus felis

2013

Cat

Pneumonia

Germany

[5, 7]

[18]

LOHX00000000

25

DSM 26322T (HKU33T)

Streptobacillus hongkongensis

2014

Human

Abscess

Hong Kong

[8]

[18]

LOHY0000000

26

AHL 370-1T

Streptobacillus notomytis

1979

Spinifex hopping mouse

Sepicaemia, cultured from liver tissue

Australia

[57]

[6]

SAMN04038436

27

KWG2

Streptobacillus notomytis

n. d. a.

Rat (Rattus rattus)

Oral swab

Japan

[39]

this study

SAMN04099645

28

KWG24

Streptobacillus notomytis

n. d. a.

Rat (Rattus rattus)

Oral swab

Japan

[39]

this study

SAMN04099670

29

OGS16T

Streptobacillus ratti

n. d. a.

Rat (Rattus rattus)

Oral swab

Japan

[39]

[18]

SAMN04099675

30

CCUG 41628T

Sneathia sanguinegens

1999

Human

Blood

Sweden

[58, 59]

[38]

LOQF00000000

31

Sn35

“Sneathia amnii”

n. d. a.

Human

Vaginal microbiota

n. d. a.

[19]

[19]

NZ_CP011280

32

NCTC 11300T (ATCC 33386T)

Sebaldella termitidis

1962

Termite

Intestine

n. d. a.

[60]

[17]

CP001739

33

DSM 1135 (C-1013-b)

Leptotrichia buccalis

2009

Human

Supragingival calculus

USA

n. d. a.

n. d. a.

CP001685

34

DSM 19756 (LB 57)

Leptotrichia goodfellowii

2013

Human

Prosthetic aortic valve

Germany

n. d. a.

n. d. a.

NZ_AZXW00000000

35

F0264

Leptotrichia goodfellowii

n. d. a.

Human

Oral cavity

n. d. a.

n. d. a.

n. d. a.

NZ_ADAD00000000

36

F0254

Leptotrichia hofstadii

n. d. a.

n. d. a.

n. d. a.

n. d. a.

n. d. a.

n. d. a.

NZ_ACVB00000000

37

DSM 19757

Leptotrichia shahii

2013

Human

Gingivitis

Norway

n. d. a.

n. d. a.

NZ_ARDD00000000

38

DSM 19758

Leptotrichia wadei

2004

Human

Saliva

Norway

[2]

n. d. a.

NZ_ARDS00000000

39

F0279

Leptotrichia wadei

n. d. a.

Human

Subgingival plaque

n. d. a.

n. d. a.

n. d. a.

NZ_AWVM00000000

40

Str. W10393

Leptotrichia sp. oral taxon 212

2015

Human

Oral microbiome project

n. d. a.

n. d. a.

n. d. a.

CP012410

41

Str. W9775

Leptotrichia sp. oral taxon 215

2015

Human

Oral microbiome project

n. d. a.

n. d. a.

n. d. a.

NZ_AWVR00000000

42

Str. F0581

Leptotrichia sp. oral taxon 225

2015

Human

Oral microbiome project

n. d. a.

n. d. a.

n. d. a.

NZ_AWVS00000000

43

Str. F0557

Leptotrichia sp. oral taxon 879

2015

Human

Oral microbiome project

n. d. a.

n. d. a.

n. d. a.

NZ_AWVL00000000

44

CCUG 39713T

Caviibacter abscessus

1998

Guinea pig

Cervical abscess

Sweden

n. d. a.

[38]

LOQG00000000

45

1510011837

Caviibacter abscessus

2015

Guinea pig

Cervical abscess

Germany

[38]

[38]

LOQH00000000

46

AVG2115T

Oceanivirga salmonicida

1992

Atlantic salmon

Septicaemia

Ireland

[32, 61]

[37]

LOQI00000000

47

ATCC 25586

Fusobacterium nucleatum subsp. nucleatum

n. d. a.

Human

Cervico-facial lesion

n. d. a.

n. d. a.

[62]

AE009951

  1. T type strain, n. d. a. no data available, ATCC American Type Culture Collection, Rockville, USA, NCTC National Collection of Type Cultures, London, UK, CIP Collection Institut Pasteur, Paris, France, IPDH Institute for Poultry Diseases, Hannover, Germany, RIVM Rijksinstituut voor Volksgezondheid en Milieuhygiene, Bilthoven, The Netherlands, AHL Animal Health Laboratory, South Perth, Australia, ZfV Zentralinstitut für Versuchstierzucht, Hannover, Germany, DKFZ Deutsches Krebsforschungszentrum, Heidelberg, Germany, TiHo Tierärztliche Hochschule Hannover, Germany, RBF rat bite fever