Strain no. | Strain designation | Species | Year of isolation | Host | Clinic/sample | Country | Strain reference | Genome reference | Accession number |
---|---|---|---|---|---|---|---|---|---|
1 | DSM 12112T (=ATCC 14647T) | Streptobacillus moniliformis | 1925 | Human | Rat bite fever | France | [4] | [16] | CP001779.1CP001780.1 |
2 | CIP 55-48 | Streptobacillus moniliformis | 1947 | Mouse | Lymph adenitis | UK | n. d. a. | this study | LWQV00000000 |
3 | ATCC 27747 | Streptobacillus moniliformis | 1964 | Turkey | Septic arthritis | USA | [51] | this study | LWQW00000000 |
4 | NCTC 10773 | Streptobacillus moniliformis | 1971 | Human | Blood culture | UK | n. d. a. | this study | LYRU00000000 |
5 | NCTC 11194 | Streptobacillus moniliformis | 1977 | Human | Rat bite fever | UK | n. d. a. | this study | LWQX00000000 |
6 | IPDH 144/80 | Streptobacillus moniliformis | 1980 | Turkey | Septic arthritis | Germany | n. d. a. | this study | LWQY00000000 |
7 | CIP 81-99 | Streptobacillus moniliformis | 1981 | Human | Blood culture (wild rat bite) | France | n. d. a. | this study | LWSZ00000000 |
8 | AHL 370-4 | Streptobacillus moniliformis | 1982 | Mouse | Ear infection | Australia | n. d. a. | this study | LWTA00000000 |
9 | NCTC 11941 | Streptobacillus moniliformis | 1983 | Human | Haverhill fever | UK | n. d. a. | this study | LXKD00000000 |
10 | IPDH 109/83 | Streptobacillus moniliformis | 1983 | Turkey | Septic arthritis | Germany | n. d. a. | this study | LWTB00000000 |
11 | ATCC 49567 | Streptobacillus moniliformis | 1989 | Mouse | Lymph adenitis | Germany | [52] | this study | LWTC00000000 |
12 | Kun 3 (RIVM) | Streptobacillus moniliformis | 1991 | Rat | Healthy | The Netherlands | [53] | this study | LWTD00000000 |
13 | ATCC 49940 | Streptobacillus moniliformis | 1992 | Rat | Otitis media | Germany | [54] | this study | LWTE00000000 |
14 | B10/15 | Streptobacillus moniliformis | Unknown | Wild rat | Unknown | The Netherlands | n. d. a. | this study | LWTF00000000 |
15 | A378/1 | Streptobacillus moniliformis | 1995 | Wild rat | Vaginal swab | Germany | DKFZ strain collection | this study | LWTG00000000 |
16 | VA11257/2007 | Streptobacillus moniliformis | 2007 | Human (farmer) | Rat bite fever, endocarditis | Germany | [55] | this study | LWTI00000000 |
17 | VK105/14 | Streptobacillus moniliformis | 2008 | Domestic rat | Abscess | Germany | TiHo strain collection | this study | LWTJ00000000 |
18 | B5/1 | Streptobacillus moniliformis | 2009 | Laboratory mouse | After rat bite | Germany | DKFZ strain collection | this study | LXKJ00000000 |
19 | Marseille | Streptobacillus moniliformis | 2009 | Rat | Rat bite fever | La Réunion | [56] | this study | LXKI00000000 |
20 | IKC1 | Streptobacillus moniliformis | n. d. a. | Rat | Oral swab | Japan | [39] | this study | LXKH00000000 |
21 | IKC5 | Streptobacillus moniliformis | n. d. a. | Rat | Oral swab | Japan | [39] | this study | LXKG00000000 |
22 | IKB1 | Streptobacillus moniliformis | n. d. a. | Rat | Oral swab | Japan | [39] | this study | LXKF00000000 |
23 | TSD4 | Streptobacillus moniliformis | n. d. a. | Rat | Oral swab | Japan | [39] | this study | LXKE00000000 |
24 | 131000547T (DSM 29248T) | Streptobacillus felis | 2013 | Cat | Pneumonia | Germany | [18] | LOHX00000000 | |
25 | DSM 26322T (HKU33T) | Streptobacillus hongkongensis | 2014 | Human | Abscess | Hong Kong | [8] | [18] | LOHY0000000 |
26 | AHL 370-1T | Streptobacillus notomytis | 1979 | Spinifex hopping mouse | Sepicaemia, cultured from liver tissue | Australia | [57] | [6] | SAMN04038436 |
27 | KWG2 | Streptobacillus notomytis | n. d. a. | Rat (Rattus rattus) | Oral swab | Japan | [39] | this study | SAMN04099645 |
28 | KWG24 | Streptobacillus notomytis | n. d. a. | Rat (Rattus rattus) | Oral swab | Japan | [39] | this study | SAMN04099670 |
29 | OGS16T | Streptobacillus ratti | n. d. a. | Rat (Rattus rattus) | Oral swab | Japan | [39] | [18] | SAMN04099675 |
30 | CCUG 41628T | Sneathia sanguinegens | 1999 | Human | Blood | Sweden | [38] | LOQF00000000 | |
31 | Sn35 | “Sneathia amnii” | n. d. a. | Human | Vaginal microbiota | n. d. a. | [19] | [19] | NZ_CP011280 |
32 | NCTC 11300T (ATCC 33386T) | Sebaldella termitidis | 1962 | Termite | Intestine | n. d. a. | [60] | [17] | CP001739 |
33 | DSM 1135 (C-1013-b) | Leptotrichia buccalis | 2009 | Human | Supragingival calculus | USA | n. d. a. | n. d. a. | CP001685 |
34 | DSM 19756 (LB 57) | Leptotrichia goodfellowii | 2013 | Human | Prosthetic aortic valve | Germany | n. d. a. | n. d. a. | NZ_AZXW00000000 |
35 | F0264 | Leptotrichia goodfellowii | n. d. a. | Human | Oral cavity | n. d. a. | n. d. a. | n. d. a. | NZ_ADAD00000000 |
36 | F0254 | Leptotrichia hofstadii | n. d. a. | n. d. a. | n. d. a. | n. d. a. | n. d. a. | n. d. a. | NZ_ACVB00000000 |
37 | DSM 19757 | Leptotrichia shahii | 2013 | Human | Gingivitis | Norway | n. d. a. | n. d. a. | NZ_ARDD00000000 |
38 | DSM 19758 | Leptotrichia wadei | 2004 | Human | Saliva | Norway | [2] | n. d. a. | NZ_ARDS00000000 |
39 | F0279 | Leptotrichia wadei | n. d. a. | Human | Subgingival plaque | n. d. a. | n. d. a. | n. d. a. | NZ_AWVM00000000 |
40 | Str. W10393 | Leptotrichia sp. oral taxon 212 | 2015 | Human | Oral microbiome project | n. d. a. | n. d. a. | n. d. a. | CP012410 |
41 | Str. W9775 | Leptotrichia sp. oral taxon 215 | 2015 | Human | Oral microbiome project | n. d. a. | n. d. a. | n. d. a. | NZ_AWVR00000000 |
42 | Str. F0581 | Leptotrichia sp. oral taxon 225 | 2015 | Human | Oral microbiome project | n. d. a. | n. d. a. | n. d. a. | NZ_AWVS00000000 |
43 | Str. F0557 | Leptotrichia sp. oral taxon 879 | 2015 | Human | Oral microbiome project | n. d. a. | n. d. a. | n. d. a. | NZ_AWVL00000000 |
44 | CCUG 39713T | Caviibacter abscessus | 1998 | Guinea pig | Cervical abscess | Sweden | n. d. a. | [38] | LOQG00000000 |
45 | 1510011837 | Caviibacter abscessus | 2015 | Guinea pig | Cervical abscess | Germany | [38] | [38] | LOQH00000000 |
46 | AVG2115T | Oceanivirga salmonicida | 1992 | Atlantic salmon | Septicaemia | Ireland | [37] | LOQI00000000 | |
47 | ATCC 25586 | Fusobacterium nucleatum subsp. nucleatum | n. d. a. | Human | Cervico-facial lesion | n. d. a. | n. d. a. | [62] | AE009951 |