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Table 2 Analysis of genome data as well as predictions of coding regions of the Leptotrichiaceae members used in this study

From: Phylogenetic and comparative genomics of the family Leptotrichiaceae and introduction of a novel fingerprinting MLVA for Streptobacillus moniliformis

Strain no. Organism Approx. genome size (nt) CDSa rRNA tRNAb % GCc Total DNA coding regions (nt) Total non-coding regions (nt) Coding genome space (%) Average gene density (genes/Mbp) Average inter-genic region (nt)
1 S. moniliformis 1673280 1568 16 39 26.3 1556870 116410 93 937 74
2 S. moniliformis 1678906 1658 12 37 26.1 1508835 170071 89 988 103
3 S. moniliformis 1684459 1591 14 35 26.1 1486041 198418 87 945 125
4 S. moniliformis 1897024 2244 9 43 28.9 1651665 245359 85 1183 109
5 S. moniliformis 1712153 1764 3 38 26.1 1542831 169322 89 1030 96
6 S. moniliformis 1668382 1615 13 36 26.1 1484745 183637 88 968 114
7 S. moniliformis 1686977 1543 12 35 26.4 1449924 237053 84 915 154
8 S. moniliformis 1598404 1608 14 38 25.9 1470174 128230 91 1006 80
9 S. moniliformis 1689124 1675 4 36 26.1 1399686 289438 79 992 173
10 S. moniliformis 1756513 1765 14 37 26.1 1559103 197410 87 1005 112
11 S. moniliformis 1763717 1621 9 35 26.1 1488168 275549 81 919 170
12 S. moniliformis 1518628 1540 12 33 25.9 1442043 76585 95 1014 50
13 S. moniliformis 1689360 1765 5 36 26.1 1526748 162612 89 1045 92
14 S. moniliformis 1674237 1597 13 37 26.2 1477515 196722 87 954 123
15 S. moniliformis 1667701 1692 14 36 26.0 1518810 148891 90 1015 88
16 S. moniliformis 1690579 1538 16 37 26.1 1468143 222436 85 910 145
17 S. moniliformis 1608659 1507 22 34 26.2 1433763 174896 88 937 116
18 S. moniliformis 1497161 1644 8 36 25.8 1322022 175139 87 1098 107
19 S. moniliformis 1696954 1774 5 38 26.1 1521612 175342 88 1045 99
20 S. moniliformis 1696554 1688 17 37 26.0 1509528 187026 88 995 111
21 S. moniliformis 1792325 1664 16 42 26.2 1550631 241694 84 928 145
22 S. moniliformis 1759287 1737 13 43 25.9 1566621 192666 88 987 111
23 S. moniliformis 1608076 1559 10 35 26.0 1445580 162496 89 969 104
24 S. felis 1610666 1754 3 37 26.4 1450014 160652 89 1089 92
25 S. hongkongensis 1543001 1485 14 35 26.1 1324059 218942 83 962 147
26 S. notomytis 1762984 1773 9 43 28.1 1511157 251827 83 1006 142
27 S. notomytis 1426245 1349 8 40 26.4 1257996 168249 87 946 125
28 S. notomytis 1384502 1341 19 39 26.3 1256817 127685 90 969 95
29 S. ratti 1499353 1411 11 39 25.9 1318767 180586 86 941 128
30 Sneathia sanguinegens 1300753 1329 2 34 26.7 1214541 86212 93 1022 65
31 “Sn. amnii” 1339284 1282   34 28.3 1207722 131562 89 957 103
32 Sebaldella termitidis 4418842 4135 13 40 33.5 3802074 616768 84 936 149
33 Leptotrichia buccalis 2465610 2299 15 46 29.6 2062809 402801 80 932 175
34 L. goodfellowii 2281162 2241 7 39 31.6 2045213 235949 88 982 105
35 L. goodfellowii 2287284 2373 3 39 31.5 2055020 232264 89 1037 98
36 L. hofstadii 2453253 2720 13 47 30.8 2059248 394005 81 1109 145
37 L. shahii 2144606 1969 10 41 29.5 1812950 331656 82 918 168
38 L. wadei 2316529 2139 11 42 29.3 1973929 342600 83 923 160
39 L. wadei 2353455 2212 3 27 29.2 2008568 344887 83 940 156
40 Leptotrichia sp. oral taxon 212 2444904 2231 14 43 31.4 2146482 298422 86 936 130
41 Leptotrichia sp. oral taxon 215 2308492 2195 3 34 31.4 2039067 269425 87 951 123
42 Leptotrichia sp. oral taxon 225 2400083 2306 3 24 29.6 2061283 338800 84 961 147
43 Leptotrichia sp. oral taxon 879 2415750 2361 4 25 29.6 2026284 389466 81 977 165
44 C. abscessus 1219935 1198    26.5 1131456 88479 92 982 74
45 C. abscessus 1304155 1316 4 35 26.4 1201320 102835 91 1009 78
46 O. salmonicida 1769081 1869 2 38 25.4 1621182 147899 91 1056 79
47 Fusobacterium nucleatum (outgroup) 2174500 2022 15 47 27.2 1937724 236776 88 930 117
  1. aCDS: DNA coding sequences; btRNA: transfer ribonucleic acid; cGC: guanine-cytosine content