Skip to main content

Table 4 VNTR allele types of the Streptobacillus moniliformis strains used in this study

From: Phylogenetic and comparative genomics of the family Leptotrichiaceae and introduction of a novel fingerprinting MLVA for Streptobacillus moniliformis

Isolate ID VNTR_Sm1a VNTR_Sm2 VNTR_Sm3b Allele code
DSM 12112 T 9 3 16 LHL1
CIP 55-48 7 3 16 LHL10
ATCC 27747 10 3 16 LHL4
NCTC 10773 8 4 17 LHL15
NCTC 11194 6 3 17 LHL16
IPDH 144/80 6 3 16 LHL5
CIP 81-99 7 3 16 LHL10
AHL 370-4 7 2 15 LHL3
NCTC 11941 6 3 18 LHL11
IPDH 109/83 6 3 16 LHL5
ATCC 49567 6 3 16 LHL5
Kun 3 (RIVM) 6 3 18 LHL11
ATCC 49940 6 3 14 LHL6
B10/15 6 4 15 LHL7
A378/1 8 5 16 LHL2
VA11257/2007 6 3 16 LHL5
VK105/14 8 3 16 LHL13
B5/1 8 5 16 LHL2
Marseille 6 4 14 LHL14
IKC1 6 3 15 LHL8
IKC5 5 3 15 LHL9
IKB1 6 3 16 LHL5
TSD4 11 3 18 LHL12
A40-13 c 11 2 17 LHL17
  1. Bold rows represent strains used for a PCR-based validation of in silico identified VNTR allele types (underlined alleles were not found in silico and only identified after PCR amplification); a in order to fit requirements of the database, the repeat copy numbers at locus VNTR_Sm1 have been rounded up to receive integer values (e.g., 9 instead of 8.7); bwhile the repeat copy numbers at locus VNTR_Sm3 have been rounded up to the next half-value and doubled to receive integer values (e.g., 15 instead of 7.2); T: type strain; cstrain was only used for validation (no complete genome available)