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Table 3 Summary statistics of RNA-Seq for PDAC xenograft models analyzed in this study

From: CASTIN: a system for comprehensive analysis of cancer-stromal interactome

Sample

Cell line

Totala

PFb

Humanc

Moused

Mouse (%)e

ExpID-88

KLM-1

40315040

36210281

14306947

915402

6.01

ExpID-89

Capan-1

42088225

37433177

18147400

2041946

10.11

ExpID-90

PANC-1

42912362

38177843

18700371

2007413

9.69

ExpID-91

PK-1

36841310

33534549

14071808

5663160

28.70

ExpID-92

PK-8

37239118

33971461

15024350

2902408

16.19

ExpID-93

PK-45P

38612205

35070083

11713564

9796740

45.54

ExpID-94

PK-9

40328852

36514269

16929209

2015939

10.64

ExpID-95

MiaPaca-2

39641561

35751983

20439739

2037175

9.06

  1. aTotal Number of reads
  2. bNumber of reads passing Illumina’s filter
  3. cNumber of reads assigned to human by the CASTIN system
  4. dNumber of reads assigned to mouse by the CASTIN system
  5. ePercentage of mouse reads, expressed by d/(c + d)