Table 2 Sex-linked loci, including reference (REF) and SNP allele sequences with SNP positions bolded
| Â | Tadpoles | Adults | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Reference allele homozygous proportion | SNP allele homozygous proportion | Heterozygous proportion | Reference allele homozygous proportion | SNP allele homozygous proportion | Heterozygous proportion | |||||||||
Locus | Allele | Sequence | Female | Male | Female | Male | Female | Male | Female | Male | Female | Male | Female | Male |
RaclCT001 | REF | TGCAGCCAACATGTGTTTATGTGCTTTGTTCAGCATG | 1.00 | 0.00 | 0.00 | 0.08 | 0.00 | 0.92 | 1.00 | 0.00 | 0.00 | 0.02 | 0.00 | 0.98 |
SNP | TGCAGCCAACATGTGTTTATGTACTTTGTTCAGCATG | |||||||||||||
RaclCT002 | REF | TGCAGCGAGAACATTTCGGCATG | 1.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.04 | 0.00 | 0.00 | 0.00 | 0.96 |
SNP | TGCAGCGAGAACATTTTGGCATG | |||||||||||||
RaclCT003 | REF | TGCAGACAGTTGATGACTTCTGCGCACTGTGTCCTTCAGCATG | 1.00 | 0.00 | 0.00 | 0.23 | 0.00 | 0.77 | 1.00 | 0.06 | 0.00 | 0.11 | 0.00 | 0.83 |
SNP | TGCAGACAGTTGATGACTTTTGCGCACTGTGTCCTTCAGCATG | |||||||||||||
RaclCT004 | REF | TGCAGTAGGCATTGGTGATTCATTGATTGTTTTATGCATG | 0.92 | 0.00 | 0.00 | 0.00 | 0.08 | 1.00 | 0.96 | 0.13 | 0.00 | 0.02 | 0.04 | 0.85 |
SNP | TGCAGTAGGCATTGGTGATTCATTAATTGTTTTATGCATG | |||||||||||||
RaclCT005*a | REF | TGCAGACAAACTCATGCTGTGTCTAATCACAGCACAGGTCAGAGTGGGGCATGTGCATG | 0.75 | 0.00 | 0.00 | 0.08 | 0.25 | 0.92 | 0.91 | 0.07 | 0.00 | 0.04 | 0.09 | 0.89 |
SNP | TGCAGACAAACTCATGCTGTGTCTAATCACAGCACAGGTCAGAGTAGGGCATGTGCATG | |||||||||||||
RaclCT006a | REF | TGCAGTGTTATTGCATCATAGGAGCATG | 0.92 | 0.31 | 0.00 | 0.00 | 0.08 | 0.69 | 0.91 | 0.07 | 0.00 | 0.04 | 0.09 | 0.89 |
SNP | TGCAGTGTTATTGCATTATAGGAGCATG | |||||||||||||
RaclCT007a | REF | TGCAGCTCAGTCTCTCCGGCCTCTGTGTGTCCTGTCCTTGACAGCATG | 1.00 | 0.38 | 0.00 | 0.00 | 0.00 | 0.62 | 0.96 | 0.07 | 0.00 | 0.13 | 0.04 | 0.80 |
SNP | TGCAGCTCAGTATCTCCGGCCTCTGTGTGTCCTGTCCTTGACAGCATG | |||||||||||||
RaclCT008 | REF | TGCAGATGAGGATGTACTGGCTTCACTGGCTTCAATTACTGCATG | 0.92 | 0.00 | 0.00 | 0.00 | 0.08 | 1.00 | 0.87 | 0.09 | 0.00 | 0.04 | 0.13 | 0.87 |
SNP | TGCAGATGAGGATGTACTGGCTTCACTGGCTTTAATTACTGCATG | |||||||||||||
RaclCT009a | REF | TGCAGCTGGGTCTGATCCCACAAGATCCTTCATCGTCGCATG | 1.00 | 0.38 | 0.00 | 0.00 | 0.00 | 0.62 | 0.91 | 0.06 | 0.04 | 0.13 | 0.04 | 0.81 |
SNP | TGCAGCTGGGTCTGATTCCACAAGATCCTTCATCGTCGCATG | |||||||||||||
RaclCT010 | REF | TGCAGTTTTTTCTCACAATGCAGCAGCATG | 0.92 | 0.00 | 0.00 | 0.08 | 0.08 | 0.92 | 0.90 | 0.07 | 0.00 | 0.13 | 0.10 | 0.80 |
SNP | TGCAGTTTTTTCTCACAATACAGCAGCATG | |||||||||||||
RaclCT011*a | REF | TGCAGCTCACTCTGTACAGATTCCCTGCATGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGA | 0.75 | 0.31 | 0.00 | 0.00 | 0.25 | 0.69 | 0.87 | 0.09 | 0.00 | 0.09 | 0.13 | 0.81 |
SNP | TGCAGCTCACTCTCTACAGATTCCCTGCATGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGA | |||||||||||||
RaclCT012^ | REF | TGCAGCCATGTGGCTAATTAGAAGGCTGGAGGCTGCAAGTTTCTAGGCATG | 0.92 | 0.00 | 0.00 | 0.08 | 0.08 | 0.92 | 0.74 | 0.04 | 0.00 | 0.11 | 0.24 | 0.85 |
SNP | TGCAGCCATGTGACTAATTAGAAGGCTGGAGGCTGCAAGTTTCTAGGCATG | |||||||||||||
RaclCT013^ | REF | TGCAGCTGTTTTTGCCACAAAGTGCATG | 0.92 | 0.00 | 0.00 | 0.15 | 0.08 | 0.85 | 0.61 | 0.02 | 0.13 | 0.15 | 0.26 | 0.83 |
SNP | TGCAGCTTTTTTTGCCACAAAGTGCATG | |||||||||||||