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Table 1 Correlation and RMSE between pairwise distances between some chromosomal structures at 1 M and 500 KB resolutions

From: Chromosome3D: reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealing

Chromosome Spearman’s rank correlation coefficient RMSE
3 0.95 2.16 (8.92)
4 0.96 2.10 (5.25)
5 0.96 2.29 (6.50)
6 0.95 2.43 (9.05)
8 0.96 2.49 (6.60)
10 0.94 2.64 (8.14)
11 0.90 3.31 (10.16)
12 0.94 2.64 (8.22)
13 0.97 1.61 (6.81)
14 0.94 2.95 (8.30)
16 0.89 4.25 (10.80)
17 0.85 4.05 (9.85)
19 0.86 4.19 (13.36)
20 0.90 3.21 (9.31)
21 0.93 4.81 (5.93)
22 0.86 4.66 (7.58)
X 0.96 2.01 (6.08)
  1. Numbers in parenthesis correspond to the RMSEs between 1 MB structures and the corresponding extended structures