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Table 1 Correlation and RMSE between pairwise distances between some chromosomal structures at 1 M and 500 KB resolutions

From: Chromosome3D: reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealing

Chromosome

Spearman’s rank correlation coefficient

RMSE

3

0.95

2.16 (8.92)

4

0.96

2.10 (5.25)

5

0.96

2.29 (6.50)

6

0.95

2.43 (9.05)

8

0.96

2.49 (6.60)

10

0.94

2.64 (8.14)

11

0.90

3.31 (10.16)

12

0.94

2.64 (8.22)

13

0.97

1.61 (6.81)

14

0.94

2.95 (8.30)

16

0.89

4.25 (10.80)

17

0.85

4.05 (9.85)

19

0.86

4.19 (13.36)

20

0.90

3.21 (9.31)

21

0.93

4.81 (5.93)

22

0.86

4.66 (7.58)

X

0.96

2.01 (6.08)

  1. Numbers in parenthesis correspond to the RMSEs between 1 MB structures and the corresponding extended structures