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Table 1 Performance of RD-Analyzer for predicting RD and differentiating Mtb lineages and MTC species

From: In silico region of difference (RD) analysis of Mycobacterium tuberculosis complex from sequence reads using RD-Analyzer

  1. Note A absence, P presence, com complete (no deletion), 7D 7 bp deletion, 6D 6 bp deletion; and NA not available. Concordance (Validation, %): concordance in predicting respective RDs in the validation dataset, in the unit of %. Concordance (Lineage): concordance of lineage/sublineage prediction for each lineage. Bold letters with grey shades refer to key makers for species or lineages identification. Italic characters denote where unexpected absence and presence was discovered, with the superscript denotes the number of strains with unexpected predictions