Table 3 Identification of potential RDs for lineage classification in Mtb lineages without existing RD markers

Lineage 4.3.4.2.1

15

1

164,942

165,740

799

100 % (15/15)

100 % (102/102)

Lineage 4.6.1.2

11

1

2,902,556

2,904,328

1,773

100 % (11/11)

97.17 % (103/106)

2

2,265,142

2,266,241

1,100

100 % (11/11)

98.11 % (104/106)

3

1,190,141

1,190,733

593

4

2,634,174

2,634,542

369

5

3,594,343

3,594,407

65

Lineage 4.6.2.2

4

1

1,897,554

1,900,204

2,651

100 % (4/4)

99.12 % (112/113)

2

3,785,220

3,785,638

419

3

3,905,337

3,905,721

385

4

3,742,614

3,742,895

282

Lineage 4.4.1.1

4

1

2,025,760

2,028,437

2,678

100 % (4/4)

99.12 % (112/113)

2

3,123,673

3,125,705

2,033

100 % (4/4)

99.12 % (112/113)

3

3,112,311

3,112,459

149

4

1,313,135

1,313,278

144

5

3,377,623

3,377,670

48