Skip to main content

Table 1 Overview of transcriptome assembly statistics for C. borealis and H. americanus

From: Deep sequencing of transcriptomes from the nervous systems of two decapod crustaceans to characterize genes important for neural circuit function and modulation

  C. borealis H. americanus
Raw reads 414,978,768 452,237,240
Clean reads 391,060,790 426,712,238
% Q Scores ≥ 30 92.96 92.72
% GC 43.4 39.4
Average clean read length (bp) 97.05 97.16
Assemblers CLC Genomics SeqMan NGen CLC Genomics SeqMan NGen
Number of Contigs 42,766 67,380 60,273 45,043
N50 (bp) 2,178 1,239 2,357 2,258
N75 (bp) 1,058 763 1,169 1,085
Mean contig length (bp) 1,544 1,076 1,657 1,799
Longest contig (bp) 21,761 14,125 25,723 17,700
Shortest contig (bp) 454 451 453 450
Total assembled bases 66,058,464 72,508,321 99,847,148 81,065,797