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Table 1 Overview of transcriptome assembly statistics for C. borealis and H. americanus

From: Deep sequencing of transcriptomes from the nervous systems of two decapod crustaceans to characterize genes important for neural circuit function and modulation

 

C. borealis

H. americanus

Raw reads

414,978,768

452,237,240

Clean reads

391,060,790

426,712,238

% Q Scores ≥ 30

92.96

92.72

% GC

43.4

39.4

Average clean read length (bp)

97.05

97.16

Assemblers

CLC Genomics

SeqMan NGen

CLC Genomics

SeqMan NGen

Number of Contigs

42,766

67,380

60,273

45,043

N50 (bp)

2,178

1,239

2,357

2,258

N75 (bp)

1,058

763

1,169

1,085

Mean contig length (bp)

1,544

1,076

1,657

1,799

Longest contig (bp)

21,761

14,125

25,723

17,700

Shortest contig (bp)

454

451

453

450

Total assembled bases

66,058,464

72,508,321

99,847,148

81,065,797