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Fig. 4 | BMC Genomics

Fig. 4

From: Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans

Fig. 4

Mapping of Differentially Expressed Genes (DEG) on Metabolism. The map of all known metabolic reactions effected by differentially expressed genes comparing MeOH vs. acetate (orange), MeOH vs. TMA (purple), TMA vs. acetate (cyan) and MeOH/TMA vs. acetate (green). Reactions and metabolites are represented as green diamonds and red circles, respectively. Reactions are connected to participating metabolites by edges. Common metabolites are duplicated. Unregulated reactions are indicated by thin lines. Genes were considered differentially expressed if the p-value ≤ 0.01 as computed in all of the three methods: DESeq2, edgeR and PoissonSeq. Reaction and metabolite names can be seen by zooming into Additional file 1: Figures S19 and S20

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BMC Genomics

ISSN: 1471-2164

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