Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans

Table 1 Count of genes that are differentially expressed when comparing growth substrates predicted by several methods

^aIntersection of the sets of differentially expressed genes predicted by the three methods. ^bCount of differentially expressed genes that are associated with reactions in the metabolic model. ^cThe differential expression procedure applied to reads summed over putative operons of a specific dataset, where the number reported is total genes called as differentially expressed, while the number in parenthesis is the total number of operons called as differentially expressed. ^dIntersection of the sets of differentially expressed genes predicted to be in differentially expressed operons (because operon structures were not conserved across the methods)

ISSN: 1471-2164