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Fig. 2 | BMC Genomics

Fig. 2

From: Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location

Fig. 2

CNV patterns detected by the Ath_CNV610-611_MLPA assay. a-f, probe signal plots representative of accessions with: no copy number changes - “basic” genotype (a), deletion of AT3G18530 and AT3G18535 – “del-2” genotype (b), duplication of MSH2 – “dupl-1” genotype (c), duplication of AT3G18530 and AT3G18535 - “dupl-2” genotype (d), duplication of MSH2, AT3G18530 and AT3G18535 with equal signals from all probes - “dupl-3-a” genotype (e) or duplication of MSH2, AT3G18530 and AT3G18535 with increased signal from probe mlpaD - “dupl-3-b” (f). g, heatmaps of probe signals (rows) in accessions (columns) grouped by the CNV pattern. Color bars above the heatmaps indicate the genotypes represented by plots (a-f). Data on plots (a-f) are from accessions: Lag2-2, Vie-0, Kl-5, La-0, Uod-1 and Bak-7 respectively. See Table 1 for the description of MLPA probes

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BMC Genomics

ISSN: 1471-2164

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