Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location

Table 1 Probes used in the Ath_CNV610-611_MLPA assay and their target genes

Probe	Locus	Gene product	Amplified fragment length (bp)
mlpaA	AT3G18520	HDA15, protein with similarity to histone deacetylases	108
mlpaB	AT3G18524	MSH2, MutS protein homolog 2, involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes	152
mlpaC	AT3G18524		128
mlpaD	AT3G18530	ARM repeat superfamily protein	168
mlpaE	AT3G18530	ARM repeat superfamily protein	117
mlpaF	AT3G18535	Tubulin-tyrosine ligase	160
mlpaG	AT3G18535	Tubulin-tyrosine ligase	99
mlpaH	AT3G18550	BRC1, a TCP transcription factor, arrests axillary bud development and prevents axillary bud outgrowth	136
ctrl1	AT1G01040	DCL1, a RNA helicase involved in microRNA processing	96
ctrl2	AT4G21580	oxidoreductase, a zinc-binding dehydrogenase family protein	111
ctrl3	AT2G36230	APG10, a BBMII isomerase involved in histidine biosynthesis	124
ctrl4	AT5G23290	PFD5, a prefoldin involved in unfolded protein binding	144
ctrl5	AT1G73010	PS2, a pyrophosphate-specific phosphatase	172

ISSN: 1471-2164