Table 1 Overview of differentially expressed genes and orthologs in social amoebae
A: orthologs and expression counts | ||||
DD | DL | DF | PP | |
Number of genes | 12319 | 10232 | 11879 | 11440 |
Expressed in data set | 11549 | 10216 | 11854 | 11315 |
Ortholog families (ORTHOMCL) | 7290 | 7172 | 7316 | 7114 |
B: definition of expression sets with different methods | ||||
Orthologs between all species | 5895 | |||
In developmental set | ||||
A | ≥ 3x developmentally upregulated | DD DL DF PP | 2352 2895 2605 2955 | 776 |
B | Differentially expressed orthologsa | 150 | ||
C | all | DD specific | ||
Differentially expressed genes DDa | 493 | 250 | 243 | |