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Fig. 4 | BMC Genomics

Fig. 4

From: Genome-wide association study (GWAS) reveals the genetic architecture of four husk traits in maize

Fig. 4

GWAS-derived Manhattan plots showing significant P-values associated with husk traits using MLM and association mapping results, genomic locations and allele effects of significant SNPs located around representative genes for husk traits. Each dot represents an SNP. The horizontal dashed blue line represents the Bonferroni-corrected significant threshold 1.04 × 10-5. Nine unique SNPs that met this level are enlarged and marked with red dots. a HN; b HW; c HT; d–f Regional plots showing association mapping results for SNPs located around GRMZM2G124239 (d), GRMZM2G029077 (e), GRMZM2G056598 (f); g– i Allele effects of the most significant SNPs for husk traits. *Significant at P ≤ 0.05; **significant at P ≤ 0.01, g GRMZM2G124239, h GRMZM2G029077, i GRMZM2G056598

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