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Table 1 Properties of genome-sequenced representatives of completely oxidizing SRB

From: Genome and catabolic subproteomes of the marine, nutritionally versatile, sulfate-reducing bacterium Desulfococcus multivorans DSM 2059

 

Members of Desulfobacteraceae

Property

Desulfococcus multivorans 1be1

Desulfococcus biacutus KMRActS

Desulfococcus oleovorans Hxd3

Desulfatibacillum alkenivorans AK-01

Desulfobacula toluolica Tol2

Desulfobacterium autotrophicum HRM2

Physiological characteristics

 Organic substrates

  Aliphatic hydrocarbons

-

-

C12 - C20

C13 - C18

-

-

  Aromatic hydrocarbons

-

-

-

-

1

-

  Fatty acids

< C14 a, b

< C7 a

C4 - C18

< C16

< C4

< C16 a

  Other aliphatic compounds

6

8

-

3 c

8

8

  Polar aromatic compounds

7

-

-

-

7

-

 Electron acceptors

  Sulfate

+

+

+

+

+

+

  Sulfite

+

+

+

+

+

-

  Thiosulfate

+

+

+

+

+

+

  Autotrophy

-

-

-

+

-

+

  Syntrophy

-

n.d.

n.d.

+

n.d.

n.d.

Genome features

  Size (bp)

4 455 399

5 242 029

3 944 167

6 517 073

5 197 905

5 589 073

  Sequencing status

complete

completed

complete

complete

complete

complete

  G + C content (mol%)

57

58

57

56

42

49

  rRNA operons

3

1

1

2

4

6

  tRNAs

54

51

47

56

48

50

  Coding sequences (CDS)

3942

4708

3267

5296

4375

4943

  Coding (%)

87

89

88

87

87

88

  Average size (bp)

985

987

1066

1080

1039

1017

  Assigned function

2648

3520

2602

4053

3188

3477

  Conserved unknown

689

1162e

665e

1243e

681

1466e

  Unknown

605

512

  Plasmids

-

-

-

-

-

1

  Phage

-

n.d.

-

-

1

1

  CRISPR

6

8

2

1

3

1

  Accession number

CP015381

125602g

CP000859

CP001322

FO203503

CP001087

  References

([31]; this study)

([75, 76]; IMGf)

([77]; IMGf)

[16, 78]

[15, 79]

[14, 80]

  1. n.d., no data available
  2. aalso branched-chain fatty acids
  3. balso cyclohexane carboxylate
  4. cpoorly utilized
  5. ddraft sequence
  6. ewithout predicted function (https://img.jgi.doe.gov/)
  7. f IMG, https://img.jgi.doe.gov/
  8. gNCBI taxon ID