Analysis of the association between codon optimality and mRNA stability in Schizosaccharomyces pombe

BMC Genomics

Table 2 Genome-wide RNA kinetic data in S. pombe

Name	Reference	Method	Poly(A) enrichment	Quantification	Number of time points	Number of replicates	Labeling duration [min]
Mata (1)	[56]	4sU labeling	oligo(dT) priming	Microarray	1	1	15
Mata (2)	[56]	4sU labeling	oligo(dT) priming	Microarray	1	1	30
Mata (3)^a	[47, 56]	4sU labeling	oligo(dT) priming	Microarray	1	1	15
Mata (4)^a	[47, 56]	4sU labeling	oligo(dT) priming	Microarray	1	1	30
Cramer	[47]	4sU labeling	oligo(dT) priming	Microarray	1	2	6
Mata (5)	[57]	4sU labeling	oligo(dT) priming	Microarray	1	7	7 or 10
Gagneur	[58]	4tU labeling	None	RNA-seq	6	2	2, 4, 6, 8, 10, and steady state

^aThe “Mata (3)” and “Mata (4)” datasets contain values that were recomputed from the “Mata (1)” and “Mata (2)” data, respectively, taking into account labeling bias and cell division

ISSN: 1471-2164