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Table 3 Association between codon optimality and mRNA half-lives

From: Analysis of the association between codon optimality and mRNA stability in Schizosaccharomyces pombe

 

cTE

nTE

Total

Observed

Expected

P value

Total

Observed

Expected

P value

S. cerevisiae

Cramer (1)

25

23

9.8

1.5e-11

25

21

12.3

1.9e-05

Cramer (2)

26

18

10.2

1.2e-04

26

19

12.8

3.1e-03

Gresham

22

16

8.7

1.9e-04

22

17

10.8

2.4e-03

S. pombe

Mata (5)

27

24

12.4

9.2e-09

27

22

15.5

1.7e-03

Gagneur

26

22

11.9

6.7e-07

26

21

14.9

3.5e-03

  1. Total numbers of codons with positive CSC values (“Total”) among 61 codons, observed numbers of optimal codons with positive CSC values (“Observed”), expected numbers of optimal codons with positive CSC values (“Expected”), and P values from chi-square tests
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BMC Genomics

ISSN: 1471-2164

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