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Table 2 Cold shock-induced differential expression of known miRNAs

From: MicroRNAs regulate gene plasticity during cold shock in zebrafish larvae

miRNA

Mature miRNA sequence

Fold change

Up-regulated miRNAs

 Dre-mir-29b-1

UAGCACCAUUUGAAAUCAGUGU

3.90

 Dre-mir-99-2

AACCCGUAGAUCCGAUCUUGUG

2.04

 Dre-mir-99-1

AACCCGUAGAUCCGAUCUUGUG

1.79

 Dre-mir-92a-2

UAUUGCACUUGUCCCGGCCUGU

1.75

 Dre-mir-2184

AACAGUAAGAGUUUAUGUGCU

1.73

Down-regulated miRNAs

 Dre-mir-737

AAUCAAAACCUAAAGAAAAUA

−1.71

 Dre-mir-9-2

UCUUUGGUUAUCUAGCUGUAUGA

−1.75

 Dre-mir-363

AAUUGCACGGUAUCCAUCUGUA

−1.79

 Dre-mir-125b-2

UCCCUGAGACCCUAACUUGUGA

−1.91

 Dre-mir-199-1

CCCAGUGUUCAGACUACCUGUUC

−2.79

  1. After eliminating miRNAs whose expression might be changed due to development process during incubation (control vs normal). The top 5 of 29 up- and 26 down-regulated known miRNAs (annotated in miRBase v18) are shown, along with their sequences and fold changes compared to the control groups
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BMC Genomics

ISSN: 1471-2164

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