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Table 5 The top 10 biological processes for cold-related genes

From: MicroRNAs regulate gene plasticity during cold shock in zebrafish larvae

Biological Processes of

P value*

Cold-induced genes

 Regulation of RNA metabolic process

1.50E-03

 Regulation of transcription, DNA-dependent

1.80E-03

 Protein amino acid phosphorylation

1.90E-03

 Phosphate metabolic process

2.10E-03

 Rgulation of transcription

5.40E-03

 Phosphorylation

6.80E-03

 Transcription

9.50E-03

 Calcium ion transport

0.01

 Neuron differentiation

0.015

 Pattern specification process

0.019

Cold-repressed genes

 Response to DNA damage stimulus

0.01

 Cellular response to stress

0.018

 Regulation of transcription

0.019

 Cell fate commitment

0.027

 Regulation of RNA metabolic process

0.03

 Embryonic morphogenesis

0.033

 Inorganic anion transport

0.037

 Regulation of transcription, DNA-dependent

0.04

 Anion transport

0.04

 DNA repair

0.047

  1. *calculated by Fisher Exact which is adopted to measure the gene-enrichment in annotation biological process
  2. The cold-related genes (Additional file 6) were annotated by DAVID bioinformatics resources 6.7. The top 10 biological processes of the cold-related genes and P values are shown