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Table 5 The top 10 biological processes for cold-related genes

From: MicroRNAs regulate gene plasticity during cold shock in zebrafish larvae

Biological Processes of P value*
Cold-induced genes
 Regulation of RNA metabolic process 1.50E-03
 Regulation of transcription, DNA-dependent 1.80E-03
 Protein amino acid phosphorylation 1.90E-03
 Phosphate metabolic process 2.10E-03
 Rgulation of transcription 5.40E-03
 Phosphorylation 6.80E-03
 Transcription 9.50E-03
 Calcium ion transport 0.01
 Neuron differentiation 0.015
 Pattern specification process 0.019
Cold-repressed genes
 Response to DNA damage stimulus 0.01
 Cellular response to stress 0.018
 Regulation of transcription 0.019
 Cell fate commitment 0.027
 Regulation of RNA metabolic process 0.03
 Embryonic morphogenesis 0.033
 Inorganic anion transport 0.037
 Regulation of transcription, DNA-dependent 0.04
 Anion transport 0.04
 DNA repair 0.047
  1. *calculated by Fisher Exact which is adopted to measure the gene-enrichment in annotation biological process
  2. The cold-related genes (Additional file 6) were annotated by DAVID bioinformatics resources 6.7. The top 10 biological processes of the cold-related genes and P values are shown