Fig. 3
Manhattan plots generated from GAPIT software for six fiber quality traits, a Elongation (ELO), b Micronaire (MIC), c Short fiber content (SFC), d Fiber strength (STR), e Upper half mean (UHM) fiber length, and f Uniformity (UI). The negative log10 transformed p values were plotted against the marker positions on the physical map of each of the 26 Upland cotton chromosome. The significant thresholds (p = 0.01 and 0.0001) are indicated by the purple and green horizontal dot line, respectively