Table 1 General characteristics of the 18 RNAseq samples after trimming and filtration
Samples | Replicates | Time (h) | No. of readsa | No. of reads mapped | No. of bases | Exon coverage depth | No. of genes expressedb |
|---|---|---|---|---|---|---|---|
MN1 | 1 | 0 | 11968893 | 6550928 | 790686427 | 54.0X | 7413 |
MN2 | 1 | 2 | 12899265 | 7054621 | 881079467 | 60.2X | 7436 |
MN3 | 1 | 4 | 12739833 | 7197167 | 897760976 | 61.3X | 7465 |
MN4 | 1 | 6 | 13641971 | 7461971 | 930946766 | 63.6X | 7515 |
MN5 | 1 | 10 | 8949640 | 4863675 | 604538988 | 41.3X | 7487 |
MN6 | 1 | 27 | 9109003 | 4840961 | 558218816 | 38.1X | 7543 |
MN7 | 2 | 0 | 7382503 | 3826743 | 454704414 | 31.0X | 7256 |
MN8 | 2 | 2 | 9425687 | 4860220 | 594473189 | 40.6X | 7420 |
MN9 | 2 | 4 | 9259734 | 5094283 | 630655472 | 43.1X | 7418 |
MN10 | 2 | 6 | 9418078 | 5124364 | 614559004 | 42.0X | 7468 |
MN11 | 2 | 10 | 11072018 | 6185630 | 751150263 | 51.3X | 7551 |
MN12 | 2 | 27 | 7301344 | 3167396 | 371782642 | 25.4X | 7531 |
MN13 | 3 | 0 | 11782413 | 6722999 | 812905343 | 55.5X | 7401 |
MN14 | 3 | 2 | 8145563 | 4536653 | 567033310 | 38.7X | 7306 |
MN15 | 3 | 4 | 11419771 | 6636608 | 827274989 | 56.5X | 7408 |
MN16 | 3 | 6 | 10960584 | 6445652 | 797790606 | 54.5X | 7550 |
MN17 | 3 | 10 | 12468947 | 7297888 | 900860683 | 61.5X | 7570 |
MN18 | 3 | 27 | 7876023 | 4271786 | 504251284 | 34.4X | 7580 |