Table 2 Performance on species of single-segment cGOF
From: GAAP: Genome-organization-framework-Assisted Assembly Pipeline for prokaryotic genomes
| Â | S.aureus MW2 | S.aureus JKD6159 |
|---|---|---|
Reference genome, Mb | ||
| Â | 2.82 | 2.81 |
Original assemblies | ||
 number (>300 bp) | 12 | 26 |
 N50 (kp) | 1,416 | 262 |
Coverage, recovered % (falsely located %) | ||
 GAAP | 99.0 (0) | 98.75 (0) |
 MeDuSa | 99.06 (17.6) | 99.2 (3.01) |
 Ragout | 99.05 (0) | 98.62 (0) |
Errors | ||
 GAAP | 9 | 3 |
 MeDuSa | 11 | 6 |
 Ragout | 10 | 4 |
Corrected N50, kb | ||
 GAAP | 1,519 | 2,276 |
 MeDuSa | 499 | 637 |
 Ragout | 1,534 | 1,757 |