Table 4 Performance on species of asymmetrical cGOF
From: GAAP: Genome-organization-framework-Assisted Assembly Pipeline for prokaryotic genomes
| Â | E.coli MG1655a | E.coli MG1655b | H.pylori OK310 | H.pylori Sat464 |
|---|---|---|---|---|
Reference genome, Mb | ||||
| Â | 4.71 | 4.71 | 1.61 | 1.58 |
Original assemblies | ||||
 number (>300 bp) | 105 | 85 | 29 | 39 |
 N50, kb | 105 | 176 | 165 | 142 |
Coverage, recovered % (falsely located %) | ||||
 GAAP | 91.89 (0) | 95.29 (0) | 98.91 (0) | 89.30 (5.23) |
 MeDuSa | 97.25 (0.96) | 97.89 (34.82) | 99.29 (10.13) | 89.61 (16.01) |
 Ragout | 96.19 (0.05) | 95.45% (0) | 98.48 (4.76) | 89.08 (5.43) |
Errors | ||||
 GAAP | 20 | 33 | 13 | 14 |
 MeDuSa | 29 | 13 | 9 | 7 |
 Ragout | 21 | 21 | 25 | 9 |
Corrected N50, kb | ||||
 GAAP | 411 | 313 | 1292 | 190 |
 MeDuSa | 268 | 308 | 964 | 348 |
 Ragout | 689 | 689 | 1330 | 348 |