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Table 1 Statistics of small RNA sequences from healthy and CBCVd-infected libraries of Humulus lupulus

From: Identification and characterization of microRNAs in Humulus lupulus using high-throughput sequencing and their response to Citrus bark cracking viroid (CBCVd) infection

Category

Healthy library

CBCVd-infected library

Reads

Unique sequences

Reads

Unique sequences

Raw Reads

21,449,604

 

68,611,723

 

Clean Reads (14–28 nt sRNA)

7,253,175 [100%]

1,192,946 [100%]

15,907,779 [100%]

4,710,976 [100%]

miRNA

2,035,988 [28.07%]

9394 [0.78%]

2,845,586 [17.88%]

18,651 [0.39%]

rRNA/tRNA/snRNA/snoRNA

123,593 [1.70%]

14,795 [1.24%]

92,650 [0.58%]

8992 [0.19%]

Un-annotation

5,093,594 [70.22%]

1,168,757 [97.97%]

12,969,543 [81.52%]

4,683,333 [99.41%]