Skip to main content

Table 3 List of novel miRNAs and their recoveries profiling in response to CBCVd-infection in Humulus lupulus

From: Identification and characterization of microRNAs in Humulus lupulus using high-throughput sequencing and their response to Citrus bark cracking viroid (CBCVd) infection

miRNA name

Sequence (5′-3′)

Length

Normalized value

Fold-change (log2 IS/HS)

P-value

Significance lable

Healthy sample (HS)

Infected sample (IS)

hop-miR01

UCUGAAUAAAUUAUGGUACCGAA

23

3.033154446

3.20597866

0.079945862

0.105727

 

hop-miR02

UUUCUGUUCGACUGGUAGAGA

21

4.273990356

66.57120394

3.961242702

3.32E-184

**

hop-miR03

UUGGUACCCUAAACUCAGAUU

21

18.47466799

8.046377813

−1.199137052

0.000135

 

hop-miR04

UUUUUGGCACUGUAAAUUAUUCA

23

0.01

2.26304376

7.822120672

1.68E-08

**

hop-miR05

CCGAAACAUGGUCUAAACUGU

21

0.01

1.571558167

7.29605186

4.23E-06

**

hop-miR06

GUAAUUGACUGUUUGAACUCU

21

0.01

0.817210247

6.352635388

0.001759

**

hop-miR07

CUAAUGUCUCUGGCCGCGGCC

21

0.275741313

0.56576094

1.03687714

0.177719

 

hop-miR08

CUAGUUUUCGGUACUGUAAACU

22

0.551482627

23.44764785

5.409983958

9.65E-75

**

hop-miR09

GGGUACCAUAUGAGCAUUAUUGA

23

1.792318536

5.154710786

1.524064425

4.58E-08

 

hop-miR10

UAUAAAAUAGUUCAAAUAGACU

22

0.01

0.56576094

5.822120672

0.013132

**

hop-miR11

UCGGUGAACUCUCUUAUUCGC

21

0.01

2.26304376

7.822120672

1.68E-08

**

hop-miR12

AAUUAAAUUUGAGUUUAGGGUAC

23

0.551482627

3.708877273

2.749595188

2.75E-09

**

hop-miR13

GCUCUAAAUAACUACAAUAUACA

23

0.137870657

3.39456564

4.62183964

4.50E-11

**

hop-miR14

UUGGUACCCUAAACUCAGAUU

21

19.02615062

2.388768413

−2.993644805

7.35E-26

**

hop-miR15

UUUAGAUCUUCCUAUAUAAUAUG

23

0.01

1.005797227

6.65219567

0.000389

**

hop-miR16

AAACGUGUAGAUCUUGAAAAAA

22

0.137870657

2.137319107

3.954414979

6.80E-07

**

hop-miR17

CUCUCGAAAUACUUGUUCUACC

22

0.275741313

1.823007473

2.724933133

4.84E-05

**

hop-miR18

GAAAACAGAUUAUUUGAACUC

21

0.137870657

2.07445678

3.911346258

1.09E-06

**

hop-miR19

UAAACUAUUCGAAAUUUUCUGAA

23

0.82722394

1.382971187

0.741421256

0.052831

 

hop-miR20

ACAUAUUUGGUACCAUAAACUC

22

0.137870657

2.514493067

4.188880233

3.87E-08

**

hop-miR21

UGAAUAGUUUACAGUACCGAAA

22

0.01

3.96032658

8.629475594

2.15E-14

**

hop-miR22

AGGAUAAAUCUAUGUUGCGGGUG

23

0.01

0.628623267

5.974123765

0.007944

**

hop-miR23

GUUUAAAUUUUAAGUCUUGUGGU

23

0.01

0.75434792

6.237158171

0.002908

**

hop-miR24

CACGGGUCGAGAACACUGAGAG

22

22.886529

31.1168517

0.443197422

7.12E-15

 

hop-miR25

UUGGAUUCAGGGACUAUUUUU

21

0.689353283

8.737863406

3.663965116

2.80E-24

**

hop-miR26

UCCGAAUAGUUUACAGUACCGAA

23

0.01

1.194384207

6.900123184

8.62E-05

**

hop-miR27

UCGACGCUGAACCAAAUAAACAU

23

0.01

1.005797227

6.65219567

0.000389

**

hop-miR28

GAUUGGUCAAGUGGCUUACAGG

22

0.137870657

0.37717396

1.451914639

0.223324

 

hop-miR29

AUCUGUAGCCAGACACAAAGG

21

0.01

0.37717396

5.237158171

0.059312

**

hop-miR30

UUUUUGGCACUGUAAAUUAUU

21

0.41361197

1.382971187

1.741421256

0.003722

 

hop-miR31

GCAAAUUUUCAGAAAAUUCUG

21

0.689353283

2.64021772

1.937341466

1.63E-05

 

hop-miR32

AGCCGAAAACAAAGUUCAAACUG

23

0.137870657

1.760145147

3.67430706

1.17E-05

**

hop-miR33

UGUGUAUAUUGUAGUUAUUUAGA

23

0.137870657

0.9429349

2.773842734

0.004713

**

hop-miR34

GUAAUUGACUGUUUGAACUCU

21

0.01

1.194384207

6.900123184

8.62E-05

**

hop-miR35

UUAAAAUAGAACCCUAAACCCGA

23

0.965094597

7.5434792

2.966487812

1.21E-18

**

hop-miR36

UCUGAAUUAUCAUUUAACAAA

21

0.275741313

1.69728282

2.62183964

0.000117

**

hop-miR37

CUAGUUUUCGGUACUGUAAAC

21

0.137870657

5.971921033

5.436807747

8.66E-20

**

hop-miR38

CACAUGAGCAAUAUAUUUGCA

21

2.205930506

13.89257419

2.654854698

8.36E-31

**

hop-miR39

UUUCUGUUCGACUGGUAGAGA

21

4.687602326

67.38841418

3.845578487

1.63E-183

**

hop-miR40

UCAGAAACUCCAUCGUCAACG

21

26.60903673

130.3136032

2.291999502

8.69E-246

**

hop-miR41

AUGUACAUUGUAGUUAUUUAGAG

23

0.82722394

0.628623267

−0.396082268

0.929292

 

hop-miR42

UUUCUGAUCGACUGGUAGAGA

21

0.275741313

15.46413236

5.809466644

1.19E-50

**

hop-miR43

CGGGGCUUUGGGUUCAUCACC

21

4.549731669

9.115037366

1.002467109

2.19E-09

 

hop-miR44

UGACAGUUUGAUCAUAUUGAC

21

0.01

5.84619638

9.191354481

6.08E-21

**

hop-miR45

AGUUUAGGGGCCUAUUUGAACU

22

0.137870657

0.691485593

2.326383757

0.027589

**

hop-miR46

UCAAACCGUCCAAACCACACCGU

23

0.01

1.50869584

7.237158171

6.99E-06

**

hop-miR47

CCCUAGACUUAGAUUUGAU

19

0.275741313

0.314311633

0.188880233

0.651715

 

hopmiR48

GGGAGACUUUGUAGACAUUCAAC

23

0.01

0.251449307

4.65219567

0.162062

**

hop-miR49

CGUGGAAAACAUGUUUGAACCU

22

1.102965253

8.360689446

2.922234574

2.47E-20

**

Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us