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Table 1 Summary result of mapped reads

From: Tsetse fly tolerance to T. brucei infection: transcriptome analysis of trypanosome-associated changes in the tsetse fly salivary gland

Conditiona

BRepb

Total readsc

UMR to Gmm d

%e

No. Trans.f

%g

MR to Tbb h

%i

PCCj

SG + MG+

R1

57329317

38764267

67.62

7436

57.36

9033083

15.75

0.993

R1 vs R2

R2

58422283

36875950

63.12

7451

57.48

12728367

21.78

0.990

R2 vs R3

R3

44939446

27147298

60.41

7537

58.14

11826098

26.31

0.991

R1 vs R3

SG-MG+

R1

28963806

23991706

82.83

7570

58.40

83271

0.32

0.98

R1 vs R2

R2

25976974

20904134

80.47

7499

57.85

184360

0.60

0.98

R2 vs R3

R3

22656455

17897012

79.99

7420

57.24

439615

1.94

0.98

R1 vs R3

SG-MG-

R1

48197948

39337062

81.62

7554

58.27

116495

0.24

0.989

R1 vs R2

R2

55170655

44055207

79.85

7522

58.03

124863

0.22

0.990

R2 vs R3

R3

28013655

22488365

80.28

7482

57.72

69501

0.22

0.989

R1 vs R3

  1. aMG midgut, SG salivary glands. The trypanosome infection status of the respective tissue is indicated by – or + 
  2. b BRep Biological Replicate
  3. cThe total numbers of raw reads obtained after sequencing
  4. dThe number of Uniquely Mapped Reads to Glossina morsitans (assembly GmorY1)
  5. eThe percentage of UMR reported to the total number of reads
  6. fNumber of expressed transcripts, a transcript was considered expressed if the normalized reads coverage was higher than 1x
  7. gThe percentage of 6 reported to the gene dataset GmorY1.5
  8. hThe number of Mapped Reads to Trypanosoma brucei (assembly TbruceiTREU927_v6.0)
  9. iThe percentage of MR reported to the total number of reads
  10. jPearson Correlation Coefficient between replicates