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Table 1 Comparison of AnnoLnc with similar tools

From: AnnoLnc: a web server for systematically annotating novel human lncRNAs

 

AnnoLnc

ncFAN

lncPro

lncTar

LongTarget

 Annotation

Genomic location

√

-

-

-

-

RNA secondary structure

√

-

-

-

-

Expression

RNA-Seq

Microarray

-

-

-

Regulation

√

-

-

-

-

Molecular interaction

Protein/RNA

-

Protein

RNA

DNA

Network

Co-expression

Bi-color

-

-

-

Function annotation term catalog

GO

GO + KEGG

-

-

-

Associated traits/diseases

√

-

-

-

-

Evolution

√

-

-

-

-

 Interface

Text summarization

√

-

-

-

-

Integrative visualization

√

-

-

-

-

Web-based

√

√

√

-

√

Mobile-friendly

√

-

-

-

-

Web Service APIs

√

-

-

-

-

  1. Feature comparison with existing tools suggests AnnoLnc as the most comprehensive annotation tool with rich supports on user interface