Table 7 Call rate of STR calling results with RepeatSeq using the original BAM file of 10 × and those realigned with STR-realigner, ReviSTER, and GATK IndelRealigner. The best result is underlined
From: STR-realigner: a realignment method for short tandem repeat regions
Period | No. of regions | STR-realigner | ReviSTER | IndelRealigner | Original BAM |
|---|---|---|---|---|---|
1 | 5345 | 0.874 | 0.876 | 0.854 | 0.848 |
2 | 1160 | 0.790 | 0.788 | 0.760 | 0.756 |
3 | 517 | 0.830 | 0.803 | 0.778 | 0.774 |
4 | 1433 | 0.831 | 0.759 | 0.735 | 0.736 |
5 | 668 | 0.859 | 0.793 | 0.774 | 0.774 |
6 | 472 | 0.871 | 0.824 | 0.807 | 0.814 |
Total | 9595 | 0.854 | 0.836 | 0.813 | 0.809 |