Table 1 Main features of the putatively co-regulated clusters found during flux-correlation analysis. In this table, for each cluster, we report its number, the name of the regulator identified, the genes embedded in it and the conserved motif found upstream of its genes
From: Modelling microbial metabolic rewiring during growth in a complex medium
Cluster name | Motif name | Genes | Weblogo |
|---|---|---|---|
Cluster 2 | ArgR | PSHAa0194, PSHAa0698,PSHAa2175, PSHAa2287, PSHAa2290, PSHAa2291, PSHAa2292, PSHAb0333, PSHAb0428, PSHAb0543 |
|
Cluster 3 | CcpA | PSHAa0189, PSHAa0609, PSHAa0740, PSHAa1167, PSHAa1648, PSHAa1649, PSHAa1650, PSHAa1651, PSHAa2167, PSHAb0082, PSHAb0345 |
|
Cluster 6 | GalR | PSHAa0603, PSHAa0871, PSHAa1364, PSHAa1767, PSHAa2301, PSHAb0295 |
|
