Network-inference algorithms | Parameter optimization settingc |
---|---|
GENIE3-Aa | K = “all”, nb.trees = 10,000 |
GENIE3-Ba | K = “sqrt”, nb.trees = 10,000 |
TIGRESS-Ab | scoring = “area” |
TIGRESS-Bb | scoring = “max” |
ARACNE | eps = 0.1 |
BC3NET | boot = 10, alpha1 = 0.99, alpha2 = 0.99 |
SiGN-BN | Number of iteration of bootstrap method = 1,000 |