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Table 3 Bioinformatics tolls and sites mentioned in the text

From: Computer aided identification of a Hevein-like antimicrobial peptide of bell pepper leaves for biotechnological use

Name

Link

Reference

Softwares

 ClustalOmega

http://www.ebi.ac.uk/Tools/msa/clustalo/

[57]

 NCBI/Protein BLAST

http://blast.ncbi.nlm.nih.gov/Blast.cgi

[59]

 NCBI/PSI-BLAST

http://blast.ncbi.nlm.nih.gov/Blast.cgi

[60]

 Pairwise Sequence Alignment

http://www.ebi.ac.uk/Tools/psa/

[58]

 PeptideCutter

http://web.expasy.org/peptide_cutter/

[61]

 ProtParam

http://web.expasy.org/protparam/

[61]

Peptide databases

 AMPer

https://omictools.com/amper-tool

[54]

 Antimicrobial Peptide Search (APD2)

http://aps.unmc.edu/AP/

[52]

 CAMP

http://www.bicnirrh.res.in/database.php

[55]

 Database Linking AMPs (LAMP)

http://lampdatabase.com/

[53]

 PhytAMP DB

http://phytamp.pfba-lab-tun.org/main.php

[56]

Protein database

 Mascot

http://www.matrixscience.com

[43]

 NCBI-Conserved Domain DB (CDD)

http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml

[64]

 NCBI-Protein DB

http://www.ncbi.nlm.nih.gov/protein

[49]

 NCBI-GenBank DB

http://www.ncbi.nlm.nih.gov/genbank/

[50]

 Swiss-Prot Protein DB

http://web.expasy.org/docs/swiss-prot_guideline.html

[45]

 UniProtKB/Swiss-Prot

http://www.uniprot.org/

[51]

 NCBI-Reference Sequence (RefSeq) DB (nr)

http://www.ncbi.nlm.nih.gov/RefSeq/

[44]

Portal

 ExPASy

http://www.expasy.org/

[61]

 Bioactive Peptide DBs

http://www.uwm.edu.pl/biochemia/index.php/pl/biopep/32-bioactive-peptide-databases

[47]

 The Pepper Genome DB (release 2.0)

http://peppersequence.genomics.cn/page/species/index.jsp

[48]