Name | Link | Reference |
---|---|---|
Softwares | ||
ClustalOmega | http://www.ebi.ac.uk/Tools/msa/clustalo/ | [57] |
NCBI/Protein BLAST | [59] | |
NCBI/PSI-BLAST | http://blast.ncbi.nlm.nih.gov/Blast.cgi | [60] |
Pairwise Sequence Alignment | [58] | |
PeptideCutter | [61] | |
ProtParam | [61] | |
Peptide databases | ||
AMPer | [54] | |
Antimicrobial Peptide Search (APD2) | [52] | |
CAMP | [55] | |
Database Linking AMPs (LAMP) | [53] | |
PhytAMP DB | [56] | |
Protein database | ||
Mascot | [43] | |
NCBI-Conserved Domain DB (CDD) | [64] | |
NCBI-Protein DB | [49] | |
NCBI-GenBank DB | [50] | |
Swiss-Prot Protein DB | [45] | |
UniProtKB/Swiss-Prot | [51] | |
NCBI-Reference Sequence (RefSeq) DB (nr) | [44] | |
Portal | ||
ExPASy | [61] | |
Bioactive Peptide DBs | http://www.uwm.edu.pl/biochemia/index.php/pl/biopep/32-bioactive-peptide-databases | [47] |
The Pepper Genome DB (release 2.0) | [48] |