Skip to main content

Advertisement

Table 3 Bioinformatics tolls and sites mentioned in the text

From: Computer aided identification of a Hevein-like antimicrobial peptide of bell pepper leaves for biotechnological use

Name Link Reference
Softwares
 ClustalOmega http://www.ebi.ac.uk/Tools/msa/clustalo/ [57]
 NCBI/Protein BLAST http://blast.ncbi.nlm.nih.gov/Blast.cgi [59]
 NCBI/PSI-BLAST http://blast.ncbi.nlm.nih.gov/Blast.cgi [60]
 Pairwise Sequence Alignment http://www.ebi.ac.uk/Tools/psa/ [58]
 PeptideCutter http://web.expasy.org/peptide_cutter/ [61]
 ProtParam http://web.expasy.org/protparam/ [61]
Peptide databases
 AMPer https://omictools.com/amper-tool [54]
 Antimicrobial Peptide Search (APD2) http://aps.unmc.edu/AP/ [52]
 CAMP http://www.bicnirrh.res.in/database.php [55]
 Database Linking AMPs (LAMP) http://lampdatabase.com/ [53]
 PhytAMP DB http://phytamp.pfba-lab-tun.org/main.php [56]
Protein database
 Mascot http://www.matrixscience.com [43]
 NCBI-Conserved Domain DB (CDD) http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml [64]
 NCBI-Protein DB http://www.ncbi.nlm.nih.gov/protein [49]
 NCBI-GenBank DB http://www.ncbi.nlm.nih.gov/genbank/ [50]
 Swiss-Prot Protein DB http://web.expasy.org/docs/swiss-prot_guideline.html [45]
 UniProtKB/Swiss-Prot http://www.uniprot.org/ [51]
 NCBI-Reference Sequence (RefSeq) DB (nr) http://www.ncbi.nlm.nih.gov/RefSeq/ [44]
Portal
 ExPASy http://www.expasy.org/ [61]
 Bioactive Peptide DBs http://www.uwm.edu.pl/biochemia/index.php/pl/biopep/32-bioactive-peptide-databases [47]
 The Pepper Genome DB (release 2.0) http://peppersequence.genomics.cn/page/species/index.jsp [48]