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Table 1 Strains characteristics and phenotyping results

From: Carbohydrate metabolism in Oenococcus oeni: a genomic insight

Branch(1)

Strain(2)

Origin

Glucose

Trehalose

Cellobiose

Ribose

Mannose

Meli biose

L-Arabinose

Fructose

Sucrose

Maltose

Galactose

Xylose

Raffinose

Lactose

L-Sorbose

L-rhamnose

Sorbitol

Mannitol

Total(3)

Genome sequence accession number

A

S28a

France red wine

1

1

1

1

1

 

1

           

6

AZJY00000000

A

S23

England white wine

1

1

1

1

1

 

1

           

6

AZLL00000000

A

S11

France white wine

1

1

1

1

1

1

1

1

          

8

AZJX00000000

A

AWRI_B429a

Italy

1

1

1

1

1

             

5

ACSE00000000

A

Cinea

NA

1

1

1

1

1

1

            

6

AZJV00000000

A

IOEB_0608

France red wine

1

1

1

1

1

 

1

           

6

AZKJ00000000

A

IOEB_9517

France

1

1

1

1

1

             

5

AZKG00000000

A

IOEB_L65.2

Lebanon red wine

1

1

1

1

1

             

5

AZLR00000000

A

AWRI_B419a

France

1

1

1

1

1

1

1

           

7

ALAF00000000

A

VFa

France

1

1

1

1

1

1

1

           

7

AZLM00000000

A

IOEB_S436a

NA

1

1

1

1

1

1

1

           

7

AZLS00000000

A

S15

France red wine

1

1

1

1

1

1

1

   

1

       

8

AZLJ00000000

A

S161

red wine

1

1

1

1

1

1

1

   

1

       

8

AZLN00000000

A

IOEB_S277a

France

1

1

1

1

1

1

1

           

7

AZKD00000000

A

IOEB_L18.3

Lebanon red wine

1

1

1

1

1

1

            

6

AZLO00000000

A

IOEB_B10

NA

1

1

1

 

1

1

 

1

          

6

AZJW00000000

A

S19

France red wine

1

1

1

 

1

1

 

1

          

6

AZLK00000000

A

IOEB_1491

France red wine

1

1

1

 

1

1

 

1

          

6

AZLG00000000

A

AWRI_B129

France

1

1

1

1

1

1

 

1

          

7

AJTP00000000

A

IOEB_L40.4

Lebanon red wine

1

1

1

1

1

1

1

1

          

8

AZLQ00000000

A

IOEB_S450a

France

1

1

1

1

1

1

            

6

AZLT00000000

A

PSU-1a

USA red wine

1

1

1

1

1

1

1

1

          

8

CP000411 (18)

A

S14

France red wine

1

1

1

1

1

1

            

6

AZLI00000000

A

B16a

France Champagne

1

1

1

1

              

4

AZKC00000000

A

IOEB_0205

France Champagne

1

1

1

1

              

4

AZHH00000000

A

AWRI_B548a

France Champagne

1

1

1

1

              

4

ALAH00000000

A

IOEB_0607

France red wine

1

 

1

1

 

1

            

4

AZKK00000000

A

S25

France red wine

1

1

1

  

1

            

4

AZJZ00000000

A

IOEB_L26.1

Lebanon red wine

1

1

1

1

1

1

     

1

      

7

AZLP00000000

B

S13

France red wine

1

1

 

1

1

1

1

1

          

7

AZKB00000000

B

S12

France white wine

1

1

 

1

1

1

1

1

1

1

        

9

AZLH00000000

B

IOEB_0501

France red wine

1

1

1

1

1

1

1

1

1

1

1

 

1

     

12

AZIP00000000

B

IOEB_0502

France red wine

1

1

1

1

1

1

1

1

1

1

 

1

1

     

12

AZKL00000000

B

ATCC_BAA-1163

France red wine

1

1

1

1

1

1

 

1

1

         

8

AAUV00000000

B

IOEB_9803

France

1

1

1

1

1

1

1

1

1

1

        

10

AZKF00000000

B

IOEB_9805

France

1

1

1

1

1

1

1

1

1

1

        

10

AZKE00000000

B

IOEB_8417

France

1

1

1

1

1

1

1

1

1

         

9

AZKH00000000

B

IOEB_9304

France cider

1

1

1

1

1

1

1

1

 

1

        

9

AZKI00000000

B

IOEB_C28

France cider

1

1

1

1

1

1

1

1

  

1

       

9

AZLE00000000

B

IOEB_C23

France cider

1

1

1

1

1

1

1

1

1

1

        

10

AZJU00000000

C

IOEB_C52

France cider

1

1

1

1

1

1

1

1

1

1

 

1

      

11

AZLF00000000

  

total/41

41

40

39

37

36

32

23

19

9

8

4

3

2

0

0

0

0

0

  
  

Total (%)

100%

98%

95%

90%

88%

78%

56%

46%

22%

20%

10%

7%

5%

0%

0%

0%

0%

0%

  
  1. (1) The strains are listed according to their phylogenomic proximity and the branch in the dendrogram to which they belong is indicated (see Additional file 2: Figure S2)
  2. (2) The strains proposed and or commercialized as malolactic starters are indicated bya
  3. (3) The sugars are classified by order of preference. When a sugar is metabolized by a strain, the number 1 appears in the cell of the table. The number of sugars metabolized by each strain is indicated