Table 1 High quality core SNVs in outbreak isolates using NCTC11168 = ATCCC 700819 as the reference

192795

G

A

A

A

G

amidophosphoribosyltransferase

Cj0196c

226072

C

A

A

A

C

intergenic

231489

G

A

A

A

G

MFS transport protein

Cj0250c

492104

T

T

T

T

C

periplasmic protein

Cj0530

524447

C

C

T

C

C

periplasmic protein

Cj0561c

937334

C

C

C

C

T

MtaB

Cj1006c

959966

G

G

G

G

A

DNA gyrase subunit A

Cj1027c

1031608

T

T

G

T

T

serine/threonine transporter SstT

Cj1097

1137283

C

C

C

C

T

intergenic

1173179

T

T

T

T

C

hypothetical protein

Cj1245c

1181839

G

A

A

A

G

LPS assembly protein

Cj1252

1189659

A

A

A

A

G

major outer membrane protein

Cj1259

1298000

A

A

A

A

G

secreted serine protease

Cj1365c

1515973

A

A

A

A

C

D-lactate dehydrogenase

Cj1585c

1630514

C

C

C

C

T

2-isopropylmalate synthase

Cj1719c