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Table 2 Transcriptome-wide differentially expressed genes identified by edgeR analysis

From: TRPM2 SNP genotype previously associated with susceptibility to Rhodococcus equi pneumonia in Quarter Horse foals displays differential gene expression identified using RNA-Seq

Ensembl ID Gene name Log FCa Log CPMb P value FDR
ENSECAG00000022239 ANKRD22 −5.82 0.23 0.0000 0.0000
ENSECAG00000006492 DQB −2.00 7.30 0.0000 0.0028
ENSECAG00000006662 MPO −3.22 −0.44 0.0000 0.0483
ENSECAG00000017147 C15orf52 −3.08 −1.66 0.0000 0.0968
ENSECAG00000002249 PLEKHG4B −4.64 −1.57 0.0000 0.0983
ENSECAG00000008171 N/A −3.80 −0.68 0.0000 0.1476
ENSECAG00000008238 S100A5 −3.41 −1.98 0.0001 0.1476
ENSECAG00000016666 OMG 0.89 6.37 0.0001 0.2650
ENSECAG00000006656 N/A −3.08 −2.89 0.0002 0.4258
ENSECAG00000024043 CSTA −2.09 2.50 0.0003 0.4904
  1. a FC fold change
  2. b CPM counts per million