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Table 3 Transcriptome-wide differentially expressed genes identified by cuffdiff analysis

From: TRPM2 SNP genotype previously associated with susceptibility to Rhodococcus equi pneumonia in Quarter Horse foals displays differential gene expression identified using RNA-Seq

Ensembl ID Gene name Log2 FC P value Q value Significant
ENSECAG00000024043 CSTA −2.08 0.0001 0.0122 yes
ENSECAG00000024259 DQA −1.83 0.0001 0.0122 yes
ENSECAG00000019922 ADAMDEC1 −1.39 0.0001 0.0122 yes
ENSECAG00000009142 DQA −1.34 0.0001 0.0122 yes
ENSECAG00000020816 PDLIM1 −1.32 0.0001 0.0122 yes
ENSECAG00000015109 N/A −1.28 0.0001 0.0122 yes
ENSECAG00000012883 CEBPE −1.27 0.0001 0.0122 yes
ENSECAG00000023062 N/A −1.26 0.0001 0.0122 yes
ENSECAG00000019130 SIRPG −1.22 0.0001 0.0122 yes
ENSECAG00000011315 EMR3 −1.17 0.0001 0.0122 yes
ENSECAG00000013660 C1orf186 −1.16 0.0002 0.0371 yes
ENSECAG00000025078 SUSD2 −1.05 0.0001 0.0122 yes
ENSECAG00000016730 CSMD1 −0.99 0.0001 0.0122 yes
ENSECAG00000001282 CCR3 −0.95 0.0001 0.0122 yes
ENSECAG00000008322 GZMH 0.79 0.0002 0.0371 yes
ENSECAG00000007621 TRIP11 0.86 0.0003 0.0435 yes
ENSECAG00000018564 SPATS2L 0.87 0.0001 0.0221 yes
ENSECAG00000019111 CD163 0.89 0.0002 0.0308 yes
ENSECAG00000020763 MGST1 0.91 0.0001 0.0221 yes
ENSECAG00000014422 OAS2 0.92 0.0001 0.0122 yes
ENSECAG00000011776 MX1 0.93 0.0001 0.0221 yes
ENSECAG00000021989 DDX58 0.94 0.0002 0.0308 yes
ENSECAG00000003474 TTLL3 0.94 0.0001 0.0122 yes
ENSECAG00000001399 SAMD9 1.03 0.0001 0.0221 yes
ENSECAG00000014218 SIGLEC1 1.04 0.0003 0.0435 yes
ENSECAG00000008274 CLEC4E 1.05 0.0001 0.0122 yes
ENSECAG00000010117 S100A9 1.05 0.0001 0.0122 yes
ENSECAG00000013762 NCR1 1.07 0.0002 0.0308 yes
ENSECAG00000023733 MMP-1 1.10 0.0001 0.0221 yes
ENSECAG00000015006 FGFR1 1.10 0.0003 0.0435 yes
ENSECAG00000007133 TPPP3 1.11 0.0001 0.0122 yes
ENSECAG00000022042 PNP 1.11 0.0001 0.0122 yes
ENSECAG00000008356 ZNF577 1.15 0.0003 0.0435 yes
ENSECAG00000012235 BAZ2B 1.15 0.0001 0.0122 yes
ENSECAG00000009742 S100A12 1.15 0.0001 0.0122 yes
ENSECAG00000021476 MMP8 1.16 0.0001 0.0122 yes
ENSECAG00000009271 S100A8 1.18 0.0001 0.0122 yes
ENSECAG00000019411 HERC6 1.20 0.0001 0.0122 yes
ENSECAG00000026820 SEPP1 1.22 0.0001 0.0122 yes
ENSECAG00000007881 IFIH1 1.24 0.0001 0.0122 yes
ENSECAG00000014645 OASL 1.29 0.0001 0.0122 yes
ENSECAG00000010153 IFIT4 1.33 0.0001 0.0122 yes
ENSECAG00000013874 SPARC 1.44 0.0002 0.0308 yes
ENSECAG00000001481 SAMD9L 1.47 0.0001 0.0122 yes
ENSECAG00000008809 OAS3 1.51 0.0001 0.0122 yes
ENSECAG00000000500 IF16 1.53 0.0001 0.0122 yes
ENSECAG00000015395 HERC5 1.54 0.0001 0.0122 yes
ENSECAG00000001324 ISG15 1.55 0.0001 0.0122 yes
ENSECAG00000008594 BTN3A1 1.59 0.0001 0.0122 yes
ENSECAG00000006913 N/A 1.90 0.0001 0.0122 yes
ENSECAG00000019949 CYP4F 1.92 0.0001 0.0122 yes
ENSECAG00000017437 MYLPF 2.38 0.0002 0.0371 yes
ENSECAG00000004349 IFIT5 2.54 0.0001 0.0122 yes
ENSECAG00000020407 MYBPC2 2.64 0.0002 0.0371 yes
ENSECAG00000010020 HBB 2.73 0.0001 0.0122 yes
ENSECAG00000023971 TNNT3 4.46 0.0002 0.0371 yes
ENSECAG00000019728 TNNC2 5.11 0.0001 0.0122 yes
ENSECAG00000005487 N/A 8.08 0.0001 0.0122 yes