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Table 3 Transcriptome-wide differentially expressed genes identified by cuffdiff analysis

From: TRPM2 SNP genotype previously associated with susceptibility to Rhodococcus equi pneumonia in Quarter Horse foals displays differential gene expression identified using RNA-Seq

Ensembl ID

Gene name

Log2 FC

P value

Q value

Significant

ENSECAG00000024043

CSTA

−2.08

0.0001

0.0122

yes

ENSECAG00000024259

DQA

−1.83

0.0001

0.0122

yes

ENSECAG00000019922

ADAMDEC1

−1.39

0.0001

0.0122

yes

ENSECAG00000009142

DQA

−1.34

0.0001

0.0122

yes

ENSECAG00000020816

PDLIM1

−1.32

0.0001

0.0122

yes

ENSECAG00000015109

N/A

−1.28

0.0001

0.0122

yes

ENSECAG00000012883

CEBPE

−1.27

0.0001

0.0122

yes

ENSECAG00000023062

N/A

−1.26

0.0001

0.0122

yes

ENSECAG00000019130

SIRPG

−1.22

0.0001

0.0122

yes

ENSECAG00000011315

EMR3

−1.17

0.0001

0.0122

yes

ENSECAG00000013660

C1orf186

−1.16

0.0002

0.0371

yes

ENSECAG00000025078

SUSD2

−1.05

0.0001

0.0122

yes

ENSECAG00000016730

CSMD1

−0.99

0.0001

0.0122

yes

ENSECAG00000001282

CCR3

−0.95

0.0001

0.0122

yes

ENSECAG00000008322

GZMH

0.79

0.0002

0.0371

yes

ENSECAG00000007621

TRIP11

0.86

0.0003

0.0435

yes

ENSECAG00000018564

SPATS2L

0.87

0.0001

0.0221

yes

ENSECAG00000019111

CD163

0.89

0.0002

0.0308

yes

ENSECAG00000020763

MGST1

0.91

0.0001

0.0221

yes

ENSECAG00000014422

OAS2

0.92

0.0001

0.0122

yes

ENSECAG00000011776

MX1

0.93

0.0001

0.0221

yes

ENSECAG00000021989

DDX58

0.94

0.0002

0.0308

yes

ENSECAG00000003474

TTLL3

0.94

0.0001

0.0122

yes

ENSECAG00000001399

SAMD9

1.03

0.0001

0.0221

yes

ENSECAG00000014218

SIGLEC1

1.04

0.0003

0.0435

yes

ENSECAG00000008274

CLEC4E

1.05

0.0001

0.0122

yes

ENSECAG00000010117

S100A9

1.05

0.0001

0.0122

yes

ENSECAG00000013762

NCR1

1.07

0.0002

0.0308

yes

ENSECAG00000023733

MMP-1

1.10

0.0001

0.0221

yes

ENSECAG00000015006

FGFR1

1.10

0.0003

0.0435

yes

ENSECAG00000007133

TPPP3

1.11

0.0001

0.0122

yes

ENSECAG00000022042

PNP

1.11

0.0001

0.0122

yes

ENSECAG00000008356

ZNF577

1.15

0.0003

0.0435

yes

ENSECAG00000012235

BAZ2B

1.15

0.0001

0.0122

yes

ENSECAG00000009742

S100A12

1.15

0.0001

0.0122

yes

ENSECAG00000021476

MMP8

1.16

0.0001

0.0122

yes

ENSECAG00000009271

S100A8

1.18

0.0001

0.0122

yes

ENSECAG00000019411

HERC6

1.20

0.0001

0.0122

yes

ENSECAG00000026820

SEPP1

1.22

0.0001

0.0122

yes

ENSECAG00000007881

IFIH1

1.24

0.0001

0.0122

yes

ENSECAG00000014645

OASL

1.29

0.0001

0.0122

yes

ENSECAG00000010153

IFIT4

1.33

0.0001

0.0122

yes

ENSECAG00000013874

SPARC

1.44

0.0002

0.0308

yes

ENSECAG00000001481

SAMD9L

1.47

0.0001

0.0122

yes

ENSECAG00000008809

OAS3

1.51

0.0001

0.0122

yes

ENSECAG00000000500

IF16

1.53

0.0001

0.0122

yes

ENSECAG00000015395

HERC5

1.54

0.0001

0.0122

yes

ENSECAG00000001324

ISG15

1.55

0.0001

0.0122

yes

ENSECAG00000008594

BTN3A1

1.59

0.0001

0.0122

yes

ENSECAG00000006913

N/A

1.90

0.0001

0.0122

yes

ENSECAG00000019949

CYP4F

1.92

0.0001

0.0122

yes

ENSECAG00000017437

MYLPF

2.38

0.0002

0.0371

yes

ENSECAG00000004349

IFIT5

2.54

0.0001

0.0122

yes

ENSECAG00000020407

MYBPC2

2.64

0.0002

0.0371

yes

ENSECAG00000010020

HBB

2.73

0.0001

0.0122

yes

ENSECAG00000023971

TNNT3

4.46

0.0002

0.0371

yes

ENSECAG00000019728

TNNC2

5.11

0.0001

0.0122

yes

ENSECAG00000005487

N/A

8.08

0.0001

0.0122

yes