Table 1 Summary of the Baikalian amphipod data presented in the study
From: Evolution of mitochondrial genomes in Baikalian amphipods
Species | Sampling site, coordinates | Ecological features: depth of habitat, armament, nutrition | DNA template type, number of paired reads | Mean coverage of mitogenome | Mitogenome size, b.p. | AT-skew | GC-skew | GenBank nos. | References |
|---|---|---|---|---|---|---|---|---|---|
Acanthogammarus victorii | Listvyanka, 51°51’30” N, 104°50’37” E | 1.5–90 m., spiny, predator/scavanger | total DNA, 6.3 M | 40× | 17,424 a | 0.027 | −0.251 | KX341962 | This study |
Brachyuropus grewingkii | Estuary of Buguldeyka river, 52°28’N, 106°06’E–52°28’N, 106°05’E | 100–1380 m., (usually deeper than 300 m.) spiny, predator | total DNA, 6.4 M | 12× | 17,118 | 0.003 | −0.307 | KP161875 | [105] |
Crypturopus tuberculatus | Estuary of Anga river, 52°46’40” N, 106°34’60” E | 1.5–99 m., tuberous, detritophagous | mitochondrial DNA amplicons, 59,961 | 901× | 13,864 b | −0.070 | −0.013 | KX341963 | This study |
Eulimnogammarus cyaneus | Sukhoi Ruchey, 51°38’48” N, 103°45’14” E | 0–3.5 m., smooth, phytophagous | mitochondrial DNA amplicons, 541,283 | 7665× | 14,370 | −0.019 | −0.251 | KX341964 | This study |
Eulimnogammarus verrucosus | Bol’shie Koty, 51°54’11.67” N, 105°04’07.61” E | 0–12 m., (usually 0–3 m.) smooth, phytophagous | total DNA, 352.7 M | 1000× | 15,314 | −0.007 | −0.238 | KF690638 | [71] |
Eulimnogammarus vittatus | Sukhoi Ruchey, 51°38’ 48” N, 103°45’14” E | 0–30 m., (usually 0–3 m.) smooth, phytophagous | total DNA, 4.6 M | 21× | 15,534 | −0.014 | −0.222 | KM287572 | [104] |
Garjajewia cabanisii | Estuary of Buguldeyka river, 52°28’N, 106°06’E–52°28’N, 106°05’E | 80–1250 m., (usually deeper than 200 m.) spiny, predator | total DNA, 7.5 M | 24× | 17,576 a | −0.002 | −0.286 | KX341965 | This study |
Gmelinoides fasciatus | Sukhoi Ruchey, 51°38’ 31” N, 103°46’ 03” E | 0–192 m. (usually 0–5 m.), tuberous, phytophagous/ euryphagous | total DNA, 7.4 M | 14× | 18,114 | −0.001 | −0.303 | KX341966 | This study |
Linevichella vortex | Listvyanka, 51°51’12” N, 104°51’48” E | 0–88 m., (usually 1–2 m.) smooth, phytophagous | mitochondrial DNA amplicons, 13,319 | 132× | 11,444 b | −0.027 | −0.223 | KX341967 | This study |
Pallaseopsis kesslerii | Estuary of Anga river, 52°46’40” N, 106°34’60” E | 1–61 m., slightly spiny, phytophagous | mitochondrial DNA amplicons, 14,144 | 154× | 15,759 | 0.010 | −0.182 | KX341968 | This study |