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Table 1 The result of assembly in P. vera cv. Siirt using 26.77 Gb Illumina data

From: Genome survey of pistachio (Pistacia vera L.) by next generation sequencing: Development of novel SSR markers and genetic diversity in Pistacia species

 

Contigs

Scaffolds

Size(bp)

Number

Size(bp)

Number

N90

121

521,093

130

417,692

N80

262

230,751

442

163,608

N70

699

118,780

989

85,774

N60

1325

67,518

1874

47,596

N50a

2327

39,274

3399

27,069

Total Size

490,733,307

-

513,504,777

-

Total Number(> = 100 bp)

980,753

-

893,901

Total Number(> = 2 kb)

45,572

-

44,900

  1. a.The N50 of contigs or scaffolds was calculated by ordering all sequences, then adding the lengths from the longest to shortest until the added length exceeded 50% of the total length of all sequences.N60, N70, N80 and N90 were similarly defined
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BMC Genomics

ISSN: 1471-2164

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