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Table 1 A summary of all 21 attributes used in the project

From: Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

Program

Attribute

Full length or N30 region

Pepstatsa

Peptide properties: tiny, small, aliphatic, aromatic, polar, non-polar, charged, basic, acidic

Molecular weight

N30 region

Charge

A280 molar extinction coefficient

A280 molar extinction coefficient (1Ā mg/ml)

Probability of expression in inclusion bodies (PEPIB)

Full length

N30 region

N30 region

N30 region

N30 region

CAIa

Codon adaption index

Full length

ProtParamb

Isoelectric point

Instability index

Aliphatic index

GRAVY Score

Full length

N30 region

N30 region

N30 region

POODLE-Sc

N-terminal disorder (N30 disorder)

N30 region

This study

Gā€‰+ā€‰C content

Full length

  1. Web links of the above programs
  2. a http://emboss.sourceforge.net/
  3. b http://web.expasy.org/protparam/
  4. c www.cbrc.jp/cbrc-software