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Table 1 A summary of all 21 attributes used in the project

From: Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

Program Attribute Full length or N30 region
Pepstatsa Peptide properties: tiny, small, aliphatic, aromatic, polar, non-polar, charged, basic, acidic
Molecular weight
N30 region
Charge
A280 molar extinction coefficient
A280 molar extinction coefficient (1 mg/ml)
Probability of expression in inclusion bodies (PEPIB)
Full length
N30 region
N30 region
N30 region
N30 region
CAIa Codon adaption index Full length
ProtParamb Isoelectric point
Instability index
Aliphatic index
GRAVY Score
Full length
N30 region
N30 region
N30 region
POODLE-Sc N-terminal disorder (N30 disorder) N30 region
This study G + C content Full length
  1. Web links of the above programs
  2. a http://emboss.sourceforge.net/
  3. b http://web.expasy.org/protparam/
  4. c www.cbrc.jp/cbrc-software