Table 1 Assembly and annotation of the S. caffer genome
From: The complete genome sequence of the African buffalo (Syncerus caffer)
Feature | Â | Size | Source |
|---|---|---|---|
SOAP de novo assembly | Â | -- | Supplementary Table 1 |
Estimated genome size (assembly and 17mer) | Â | 2732Â Mb | -- |
N50 contigs | Â | 43. kbp | Supplementary Table 2 |
N50 scaffolds | Â | 2.4Â Mb | Supplementary Table 2 |
Average GC content | Â | 0.417 | Supplementary Table 2 |
Coding genes | a. 19,296 annotated | 430.18Â Mb | -- |
| Â | b. 469 unannotated | Â | Â |
Non-coding RNA (70,595 loci) | a. 31,940 micro RNA | 3.25Â Mb | Data not shown |
| Â | b. 1593 small nuclear RNA | 184.60 kbp | Â |
| Â | c. 36,163 transport RNA | 2.64Â Mb | Â |
| Â | d. 899 ribosomal RNA | 93.94 kbp | Â |
Repetitive elements (37.21%) | Tandem repeats | 972.19Â Mb | Supplementary Table 3, 4, 5 |