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Table 2 Gene transcripts differentially upregulated in upland VS16 as compared to the lowlands AP13 and K5 switchgrass with more than two-fold change (q-value ≤0.01)

From: Transcriptome analysis in switchgrass discloses ecotype difference in photosynthetic efficiency

Rice homolog function description

FPKM_ VS16

FPKM_ lowland

Average Fold change

AP2 domain-containing protein

77.5

345.0

4.4

auxin-repressed protein

55.9

341.3

53.9

BTBN22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains

80.5

250.7

3.3

catalase isozyme A

30.6

330.8

30.5

FAD-binding and arabino-lactone oxidase domains containing protein

60.2

414.5

2081.4

glycine rich protein family protein

202.9

554.0

2.8

heavy-metal-associated domain-containing protein

60.4

238.4

4.4

helix-loop-helix DNA-binding domain containing protein

436.7

989.7

2.3

HVA22

60.6

267.9

4.6

late embryogenesis abundant group 1

0.1

671.3

4590.7

LTPL29 - Protease inhibitor/seed storage/LTP family protein precursor

123.9

853.1

7.8

magnesium-chelatase

80.0

202.0

2.6

methyltransferase

0.5

211.7

580.0

NADP-dependent oxidoreductase

142.6

375.6

2.7

PHD-finger family protein

3.1

327.5

109.5

phytosulfokines precursor

52.7

292.6

5.7

POT family protein

223.6

881.8

6.5

ribonuclease T2 family domain-containing protein

143.3

857.3

88.4

S-adenosylmethionine synthetase

78.6

245.7

3.3

SRC2 protein

114.4

310.0

2.8

universal stress protein domain containing protein

148.2

327.2

2.2

wound induced protein

128.6

397.2

3.3