Skip to main content

Table 1 Starch metabolism genes investigated in this study

From: Genome-wide analysis of starch metabolism genes in potato (Solanum tuberosum L.)

Enzyme

PGSC Gene ID

PGSC Transcript ID

iTAG Transcript ID

NCBI Reference Sequence/GenBank

Locus At

ADP-glucose pyrophosphorylase large subunit 1 (AGPL1)

PGSC0003DMG400009026

PGSC0003DMT400023304

Sotub01g024100.1.1

NM_001288466.1

At5g19220

ADP-glucose pyrophosphorylase large subunit 2 (AGPL2)

PGSC0003DMG400015952

PGSC0003DMT400041215

Sotub07g011850.1.1

NM_001318669.1

At1g27680

ADP-glucose pyrophosphorylase large subunit 3 (AGPL3)

PGSC0003DMG400000735

PGSC0003DMT400001935

Sotub01g047210.1.1

X61187.1

At4g39210

ADP-glucose pyrophosphorylase small subunit 1.1 (AGPS1.1)

PGSC0003DMG400031084

PGSC0003DMT400079823

Sotub07g023520.1.1

NM_001288195.1

At5g48300

ADP-glucose pyrophosphorylase small subunit 1.2 (AGPS1.2)

PGSC0003DMG400046891

PGSC0003DMT400097320

Sotub12g006530.1.1

 

At5g48300

ADP-glucose pyrophosphorylase small subunit 2 (AGPS2)

PGSC0003DMG400025218

PGSC0003DMT400064936

Sotub08g010520.1.1

 

At1g05610

Alpha-amylase 1.1 (AMY1.1)

PGSC0003DMG400007974

PGSC0003DMT400020591

Sotub04g031900.1.1

M81682.1

At4g25000

Alpha-amylase 1.2 (AMY1.2)

PGSC0003DMG400020603

PGSC0003DMT400053110

Sotub03g021150.1.1

A21347.1

At4g25000

Alpha-amylase 2 (AMY23)

PGSC0003DMG400009891

PGSC0003DMT400025601

Sotub04g035480.1.1

M79328.1

At1g76130

Alpha-amylase 3 (AMY3)

PGSC0003DMG401017626

PGSC0003DMT400045435

Sotub05g011310.1.1

 

At1g69830

Alpha-amylase 3-like (AMY3-like)

  

Sotub02g012780.1.1

 

At1g69830

Alpha-glucan phosphorylase 1a (PHO1a)

PGSC0003DMG400007782

PGSC0003DMG400003495

PGSC0003DMG400002479

PGSC0003DMT400020094

PGSC0003DMT400008970

PGSC0003DMT400006337

 

D00520.1

At3g29320

Alpha-glucan phosphorylase 1b (PHO1b)

PGSC0003DMG400028382

PGSC0003DMT400072963

Sotub05g005530.1.1

NM_001288199.1

At3g29320

Alpha-glucan phosphorylase 2a (PHO2a)

chr00:18163346..18176781

  

M69038.1

At3g46970

Alpha-glucan phosphorylase 2b (PHO2b)

PGSC0003DMG400031765

PGSC0003DMT400081273

Sotub02g020370.1.1

 

At3g46970

ATP-ADP antiporter 1 (NTT1)

PGSC0003DMG400005612

PGSC0003DMT400014304

Sotub03g033540.1.1

 

At1g80300

ATP-ADP antiporter 2 (NTT2)

PGSC0003DMG400028641

PGSC0003DMT400073724

Sotub12g021790.1.1

NM_001287865.1

At1g15500

Beta-amylase 1 (BAM1)

PGSC0003DMG400001549

PGSC0003DMT400003933

Sotub09g026990.1.1

 

At3g23920

Beta-amylase 2 (BAM2)

PGSC0003DMG400024145

PGSC0003DMT400062050

Sotub08g006590.1.1

 

At5g45300

Beta-amylase 3.1 (BAM3.1)

PGSC0003DMG400001855

PGSC0003DMT400004686

Sotub08g023010.1.1

NM_001288243.1

At4g17090

Beta-amylase 3.2 (BAM3.2)

PGSC0003DMG402020509

PGSC0003DMT400052839

Sotub08g006070.1.1

 

At4g17090

Beta-amylase 4 (BAM4)

PGSC0003DMG400012129

PGSC0003DMT400031627

Sotub08g027460.1.1

  

Beta-amylase 6.1 (BAM6.1)

PGSC0003DMG400026199

PGSC0003DMT400067403

Sotub07g021140.1.1

 

At2g32290

Beta-amylase 6.2 (BAM6.2)

PGSC0003DMG400026166

PGSC0003DMT400067289

Sotub07g021110.1.1

 

At2g32290

Beta-amylase 6.3 (BAM6.3)

PGSC0003DMG400026198

PGSC0003DMT400067400

Sotub07g021090.1.1

 

At2g32290

Beta-amylase 7 (BAM7)

PGSC0003DMG400000169

PGSC0003DMT400000485

Sotub01g031940.1.1

 

At2g45880

Beta-amylase 9 (BAM9)

PGSC0003DMG400010664

PGSC0003DMT400027659

Sotub01g021680.1.1

 

At5g18670

Branching enzyme I.1 (SBE1.1)

PGSC0003DMG400022307

PGSC0003DMT400057446

Sotub07g029010.1.1

 

At3g20440

Branching enzyme I.2 (SBE1.2)

  

Sotub07g025820.1.1

 

At3g20440

Branching enzyme II (SBE2)

  

Sotub09g011090.1.1

NM_001288538.1

At2g36390

Branching enzyme III (SBE3)

PGSC0003DMG400009981

PGSC0003DMT400025846

Sotub04g035850.1.1

NM_001288254.1

At5g03650

Disproportionating enzyme 1 (DPE1)

PGSC0003DMG400016589

PGSC0003DMT400042739

Sotub04g021520.1.1

NM_001287852.1

At5g64860

Disproportionating enzyme 2 (DPE2)

  

Sotub02g006950.1.1

NM_001288247.1

At2g40840

Glucan water dikinase (GWD)

PGSC0003DMG400007677

PGSC0003DMT400019845

Sotub05g014130.1.1

NM_001288123.1

At1g10760

Glucose transporter (GLT1)

PGSC0003DMG400026402

PGSC0003DMT400067884

Sotub02g029320.1.1

AF215853.1

At5g16150

Glucose-6-phosphate translocator 1.1 (GPT1.1)

PGSC0003DMG400001041

PGSC0003DMG400005602

PGSC0003DMT400002701

PGSC0003DMT400014284

Sotub07g025910.1.1

 

At5g54800

Glucose-6-phosphate translocator 1.2 (GPT1.2)

  

Sotub03g008220.1.1

 

At1g61800

Glucose-6-phosphate translocator 2.1 (GPT2.1)

PGSC0003DMG400005269

PGSC0003DMT400013500

Sotub05g021450.1.1

AF020816.1

At1g61800

Glucose-6-phosphate translocator 2.2 (GPT2.2)

PGSC0003DMG400025495

PGSC0003DMT400065527

  

At1g61800

Granule bound starch synthase 1 (GBSS1)

PGSC0003DMG400012111

PGSC0003DMT400031568

Sotub08g026990.1.1

NM_001287989.1

At1g32900

Inorganic pyrophosphatase (PPase)

PGSC0003DMG400003103

PGSC0003DMT400008028

Sotub01g043620.1.1

 

At5g09650

Inorganic pyrophosphatase-like (PPase-like)

PGSC0003DMG400026784

PGSC0003DMT400068875

Sotub10g017670.1.1

 

At5g09650

Isoamylase 1.1 (ISA1.1)

PGSC0003DMG400020699

PGSC0003DMT400053345

 

NM_001288008.1

At2g39930

Isoamylase 1.2 (ISA 1.2)

PGSC0003DMG400030253

PGSC0003DMT400077770

Sotub10g015570.1.1

NM_001288008.1

At2g39930

Isoamylase 2 (ISA2)

PGSC0003DMG400000954

PGSC0003DMT400002502

Sotub09g015190.1.1

NM_001287875.1

At1g03310

Isoamylase 3 (ISA3)

PGSC0003DMG402007274

PGSC0003DMG401007274

PGSC0003DMT400018766

PGSC0003DMT400018765

Sotub06g007640.1.1

NM_001288291.1

At4g09020

Limit dextrinase (LDE)

  

Sotub11g012510.1.1

Sotub11g012520.1.1

Sotub11g012530.1.1

Sotub11g012540.1.1

 

At5g04360

Maltose excess 1 (MEX1)

PGSC0003DMG400024812

PGSC0003DMT400063824

Sotub04g024480.1.1

 

At5g17520

Phosphoglucan phosphatase (like SEX four 1, LSF1)

PGSC0003DMG400030092

PGSC0003DMT400077364

Sotub12g017200.1.1

 

At3g01510

Phosphoglucan phosphatase (like SEX four 2, LSF2)

PGSC0003DMG400029073

PGSC0003DMT400074765

Sotub06g009920.1.1

 

At3g10940

Phosphoglucan phosphatase (SEX4)

PGSC0003DMG400015246

PGSC0003DMT400039423

Sotub03g023920.1.1

NM_001318586.1

At3g52180

Phosphoglucan phosphatase (SEX4-like)

PGSC0003DMG400027327

PGSC0003DMT400070294

Sotub11g010680.1.1

NM_001318586.1

At3g52180

Phosphoglucan water dikinase (PWD)

PGSC0003DMG400016613

PGSC0003DMT400042818

Sotub09g030460.1.1

NM_001287941.1

At5g26570

Phosphoglucoisomerase (PGI)

PGSC0003DMG400012910

PGSC0003DMT400033620

Sotub04g029550.1.1

NM_001247654.3

At4g24620

Phosphoglucoisomerase-like 1 (PGI-like1)

PGSC0003DMG400015341

PGSC0003DMT400039665

Sotub12g005010.1.1

NM_001288294.1

At5g42740

Phosphoglucoisomerase-like 2 (PGI-like2)

PGSC0003DMG400030128

PGSC0003DMT400077470

   

Phosphoglucomutase 1 (PGM1)

  

Sotub03g007170.1.1

NM_001288352.1

At5g51820

Phosphoglucomutase 2.1 (PGM2.1)

  

Sotub07g017160.1.1

NM_001288404.1

At1g23190

Phosphoglucomutase 2.2 (PGM2.2)

chr04:35711900..35685400

   

At1g23190

Putative Phosphoglucomutase (pPGM)

  

Sotub05g017780.1.1

 

At1g70820

Starch Synthase I (SS1)

PGSC0003DMG402018552

PGSC0003DMT400047731

Sotub03g013130.1.1

NM_001288145.1

At5g24300

Starch Synthase II (SS2)

PGSC0003DMG400001328

PGSC0003DMT400003356

Sotub02g034860.1.1

NM_001288048.1

At3g01180

Starch Synthase III (SS3)

PGSC0003DMG400016481

PGSC0003DMT400042496

Sotub02g023740.1.1

X94400.1

At1g11720

Starch Synthase IV (SS4)

PGSC0003DMG400008322

PGSC0003DMT400021444

Sotub02g017380.1.1

 

At4g18240

Starch Synthase V (SS5)

PGSC0003DMG400030619

PGSC0003DMT400078688

Sotub02g030260.1.1

NM_001288111.1

At5g65685

Starch Synthase VI (SS6)

PGSC0003DMG402013540

PGSC0003DMT400035218

Sotub07g015820.1.1

NM_001247458.1

 

Sucrose Synthase 1 (SuSy1)

PGSC0003DMG400013547

PGSC0003DMT400035264

Sotub07g016120.1.1

 

At5g20830

Sucrose Synthase 2 (SuSy2)

PGSC0003DMG400013546

PGSC0003DMT400035262

Sotub07g016110.1.1

NM_001287982.1

At5g49190

Sucrose Synthase 3 (SuSy3)

PGSC0003DMG400006672

PGSC0003DMT400017087

 

NM_001288308.1

At4g02280

Sucrose Synthase 4 (SuSy4)

PGSC0003DMG400002895

PGSC0003DMT400007506

Sotub12g008670.1.1

M18745.1

At3g43190

Sucrose Synthase 6 (SuSy6)

PGSC0003DMG400031046

PGSC0003DMT400079728

Sotub03g023000.1.1

 

At1g73370

Sucrose Synthase 7 (SuSy7)

PGSC0003DMG400016730

PGSC0003DMT400043117

Sotub02g024410.1.1

 

At5g37180

Triose-phosphate/phosphate translocator (TPT)

PGSC0003DMG400022832

PGSC0003DMT400058772

Sotub10g009470.1.1

NM_001287896.1

At5g46110

Triose-phosphate/phosphate translocator-like (TPT-like)

  

Sotub01g020040.1.1

 

At5g46110

UDP-glucose pyrophosphorylase 1 (UGPase1)

  

Sotub05g026990.1.1

 

At3g03250

UDP-glucose pyrophosphorylase 2 (UGPase2)

PGSC0003DMG401013333

PGSC0003DMT400034699

Sotub11g007290.1.1

NM_001288019.1

At5g17310

Vacuolar Glucose Transporter 3-like (VGT3-like)

PGSC0003DMG401010374

PGSC0003DMT400026885

Sotub03g022010.1.1

 

At5g59250