From: The pangenome of (Antarctic) Pseudoalteromonas bacteria: evolutionary and functional insights
Strain | Contigs/Replicons | Total length | ORFs | % GC | Origin | PID | Accession number | Pigmentation |
---|---|---|---|---|---|---|---|---|
Pseudoalteromonas sp. AC163 | 565 | 4779003 | 4765 | 39.10 | Haliclonissa verrucosa. Antarctica | - | AUTK01000000 | NO |
P. arctica A 37 1 2 uid168325 | 68 | 4628018 | 4094 | 39.04 | Seawater. Arctic | 18768597 | AHBY02000000 | NO |
P. atlantica T6c uid58283 | 1 | 5187005 | 4281 | 44.62 | Seawater. California | - | AAKP01000000 | YES |
Pseudoalteromonas sp. BSi20311 uid78647 | 195 | 3979836 | 3676 | 40.33 | - | - | BADU01000000 | NO |
Pseudoalteromonas sp. BSi20429 uid78649 | 121 | 4495777 | 4030 | 39.04 | - | - | BADV01000000 | NO |
Pseudoalteromonas sp. BSi20439 uid78651 | 243 | 3882800 | 3612 | 40.22 | - | - | BADW01000000 | NO |
Pseudoalteromonas sp. BSi20480 uid78653 | 201 | 4149214 | 3967 | 39.60 | - | - | BADX01000000 | NO |
Pseudoalteromonas sp. BSi20495 uid78655 | 222 | 4826524 | 4365 | 38.92 | - | - | BADY01000000 | NO |
Pseudoalteromonas sp. BSi20652 uid78645 | 298 | 4253936 | 4085 | 38.86 | - | - | BADT01000000 | NO |
Pseudoalteromonas sp. Bsw20308 uid179221 | 146 | 4757001 | 4172 | 38.90 | Chukchi Sea. China | - | AMYA01000000 | NO |
P. citrea NCIMB 1889 uid168326 | 114 | 5337619 | 4438 | 41.13 | - | 22535931 | AHBZ02000000 | YES |
P. flavipulchra JG1 uid177806 | 61 | 5503991 | 4758 | 43.19 | Rearing water | 22740664 | AJMP01000000 | YES |
P. haloplanktis ANT 505 uid66747 | 142 | 4494717 | 4127 | 39.32 | Seawater. Antarctica | - | ADOP01000000 | NO |
P. haloplanktis ATCC 14393 uid198981 | 56 | 6513609 | 4329 | 40.84 | - | 22535931 | AHCA01000000 | NO |
P. haloplanktis TAC125 uid58431 | 2 | 3850272 | 3484 | 40.09 | Seawater. Antarctica | 16169927 | CR954246 | NO |
P. luteoviolacea B ATCC 29581 uid186644 | 61 | 4046270 | 3681 | 41.95 | Kinko Bay. Japan | 23516191 | CAPN01000000 | YES |
P. marina mano4 uid168327 | 31 | 4177200 | 3711 | 39.65 | tidal sediments. Korea | - | AHCB02000000 | NO |
Pseudoalteromonas sp. NJ631 uid199000 | 55 | 6943067 | 4591 | 43.36 | Hymeniacidon perlevis. China | - | AKXJ01000000 | NA |
Pseudoalteromonas sp. PAMC 22718 uid179404 | 56 | 5425171 | 3821 | 40.17 | Seawater. Arctic | 22815453 | AJTK01000000 | NO |
P. piscicida JCM 20779 uid168328 | 73 | 5281621 | 4524 | 43.24 | Red tide seawater Florida | 22535931 | AHCC02000000 | YES |
P. rubra ATCC 29570 uid168329 | 64 | 5969931 | 4893 | 47.80 | - | 22374963 | AHCD02000066 | YES |
P. ruthenica CP76 uid199935 | 120 | 5225945 | 3714 | 47.59 | Saltern. Spain | 23704184 | AOPM01000000 | YES |
Pseudoalteromonas sp. S8-38 | 87 | 4990009 | 4427 | 39.19 | Sediment. Antarctica | - | AUTS01000000 | NO |
Pseudoalteromonas sp. S8-8 | 79 | 4911233 | 4371 | 39.21 | Sediment. Antarctica | - | AUTR01000000 | NO |
Pseudoalteromonas sp. SM9913 uid61247 | 2 | 4037671 | 3712 | 40.28 | Sediment. Japan | 20703316 | NC_014803 | NO |
P. spongiae UST010723 006 uid168330 | 14 | 4724746 | 4185 | 40.81 | Mycale adhaeren. China | 22535931 | AHCE02000000 | YES |
Pseudoalteromonas sp. TAB23 | 367 | 5139089 | 5012 | 39.11 | Seawater. Antarctica | - | AUTP01000000 | NO |
P. haloplanktis TAC125 | 216 | 3888065 | 3740 | 39.98 | Seawater. Antarctica | - | - | NO |
Pseudoalteromonas sp. TAE56 | 163 | 4600700 | 4258 | 39.03 | Seawater. Antarctica | - | AUTN00000000 | NO |
Pseudoalteromonas sp. TAE79 | 298 | 5045088 | 4940 | 39.29 | Seawater. Antarctica | - | AUTL01000000 | NO |
Pseudoalteromonas sp. TAE80 | 360 | 4971170 | 4941 | 39.29 | Seawater. Antarctica | - | AUTM01000000 | NO |
Pseudoalteromonas sp. TB13 | 254 | 4734094 | 4489 | 39.05 | L. nobilis. Antarctica | - | AUTJ01000000 | NO |
Pseudoalteromonas sp. TB25 | 458 | 4648658 | 4546 | 39.18 | L. nobilis. Antarctica | - | AUTI01000000 | NO |
Pseudoalteromonas sp. TB41 | 122 | 4632606 | 4217 | 40.34 | A. joubini. Antarctica | - | AUTH00000000 | NO |
Pseudoalteromonas sp. TB51 | 369 | 4633324 | 4625 | 40.91 | A. joubini. Antarctica | - | AUTO00000000 | NO |
Pseudoalteromonas sp. TB64 | 275 | 4843680 | 4649 | 37.92 | A. joubini. Antarctica | - | AUTQ00000000 | NO |
P. tunicata D2 uid54181 | 37 | 4994813 | 4504 | 39.75 | C. intestinalis. Sweden | - | AAOH01000000 | YES |
P. undina NCIMB 2128 uid168331 | 20 | 4001234 | 3581 | 39.95 | Seawater. California | - | AHCF02000000 | NO |
Average: | 4802755 | 4245 | 40.53 |