Table 2 Selected loci with good quality (category A) and ploidy (6 through 14) were classified as single-dose markers (SDMs) or multi-dose markers (MDMs). High-quality SDMs (median of all individual a posteriori probabilities > 0.80) were also characterized according to their segregation pattern in the sugarcane mapping population
Reference | Total | Dosage | High-quality SDM | Segregation pattern | ||
|---|---|---|---|---|---|---|
MDM | SDM | 1:2:1 | 1:1 | |||
Methyl-filtered sugarcane genome | 15,906 | 7,014 (44.1%) | 8,892 (55.9%) | 5,266 | 912 (17.3%) | 4,354 (82.7%) |
Sorghum bicolor genome (v. 2.1) | 11,789 | 5,784 (49.1%) | 6,005 (50.9%) | 3,433 | 605 (17.6%) | 2,828 (82.4%) |
RNA-seq sugarcane transcriptome | 9,808 | 4,959 (50.6%) | 4,849 (49.4%) | 2,869 | 469 (16.4%) | 2,400 (83.6%) |
SUCEST project sequences | 3,433 | 1,736 (50.6%) | 1,697 (49.4%) | 983 | 141 (14.3%) | 842 (85.7%) |